search for: clustersim

I am interested in familiarizing with the functions belonging to paclage clusterSim. This package on-line documentation indicates a file pathname which is clear to me on Linux systems where $VAR identifies VAR as an environment variable. But what if I am using a Windows system ? I do not know how to make Windows or DOS resolve the following address: $R_HOME\library\clusterS...

...ike to apply the Calinkski and Harabasz (1974) stopping rule recommended in the Monte Carlo Simulation by Milligan and Cooper (1985). 2. 2. How do I obtain the clustering rules? (I.e. how do I assign my observations to the cluster from my final solution?). I was able to find the Package ‘clusterSim’ which Calculates Calinski-Harabasz pseudo F-statistic but I am having some difficulty substituting in the CL (A vector of integers indicating the cluster to which each object is allocated) argument in the formula: index.G1 (x,cl,d=NULL,centrotypes="centroids") Thanks in advance for an...

...understand how to interpret it and I get an error message. Then I want to make a PerMANOVA analysis comparing the different treatments with each other. I tried to look at similar problems but I get error messages. Any ideas? #NMDS step1<-read.delim2("day20.txt", row.names=1) library(clusterSim) step2<-data.Normalization(step1,type="n10") step3<-asin(sqrt(step2))*57.3 step4<-t(step3) library(vegan) step5<-data.matrix(vegdist(step4,method="bray")) step6<-metaMDS(step5, autotransform=FALSE) plot(step5) Warning message: In ordiplot(x, choices = choices, typ...

I am using some functions from package clusterSim to evaluate the best clusters layout. Here is the features vector I am using to cluater 12 signals: > alpha.vec [1] 0.8540039 0.8558350 0.8006592 0.8066406 0.8322754 0.8991699 0.8212891 [8] 0.8815918 0.9050293 0.9174194 0.8613281 0.8425293 In the following I pasted an excerpt of my program:...

Hi, I was wondering what the best equivalent to SAS's FASTCLUS and PROC CLUSTER would be. I need to be able to test the significance of the clusters by comparing the probability of obtaining an equal or greater pseudo F to the Bonferroni-corrected level. I will also need to plot r squared against the number of clusters. Thanks so much, Taisa [[alternative HTML version deleted]]

...es even after changing the R headers.) 1) One common error message is An integer constant expression is required within the array subscript operator. Here is an example: double data[(*nrow)+2*env][(*ncol)+2*env]; This affects at least packages GammaTest MCMCpack MasterBayes clusterSim dprep edci epsi knnFinder pbatR rmetasim zicounts 2) Including C header files is fraught with difficulties. Unfortunately that includes the R header files, because they in turn include system C headers. The checking of which features were available was done using the C compiler with particu...

CRAN (and crantastic) updates this week New packages ------------ * bdoc (1.0) Michael Anderson http://crantastic.org/packages/bdoc This package contains a function that will classify DNA barcodes as well as a few test and reference data sets. * bdsmatrix (1.0) Terry Therneau http://crantastic.org/packages/bdsmatrix This is a special case of sparse matrices, used by coxme and

...(0.9.5.1), bcp (2.2.0), bear (2.5.3), bibtex (0.2-0), bifactorial (1.4.4), bigmemory (4.2.3), binGroup (1.0-5), biOps (0.2.1.1), bipartite (1.12), blighty (3.1-0), bnlearn (2.1.1), bootruin (1.0-156), brglm (0.5-5), cairoDevice (2.13), caret (4.43), catspec (0.95), cgh (1.0-7.1), cluster (1.13.1), clusterSim (0.38-1), cmprskContin (1.6), coarseDataTools (0.2), coin (1.0-12), copula (0.9-7), corrplot (0.30), cshapes (0.2-4), ctv (0.6-0), cudaBayesreg (0.3-6), dagR (1.1.1), data.table (1.4.1), dclone (1.1-0), ddesolve (1.04), denstrip (1.5), depmixS4 (0.9-0), DiceKriging (1.1), difR (3.1), distr (2.2.3),...