search for: cittaro

...default yum repositories do not include any bioinformatics software (i.e. ncbi-toolkit, blat, and others). I'm googling a bit but I can't find a valuable solution: which is (or which are) the best repository I should add to have a satisfying list of bioinfo rpm? Thanks d /* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro at ifom-ieo-campus.it */ -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.centos.org/pipermail/centos/attachments/20...

Hi all, is there a function (or variable) I can use in a custom init script that identifies the init script name? i.e. I'm porting some init scripts from gentoo, where the $SVCNAME variable identifies the init script name within the script itself... d /* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro at ifom-ieo-campus.it */ -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.centos.org/pipermail/centos/attachments/20...

...unted with the same parameters (auto,nosuid,exec) on gentoo and centos server (bot x86_64)... It happens that centos is 5-10 times slower either in read and write operations... Ok, I'll try to tune rsize and wsize, but does anybody have an hint on this low performance? Thanks d Davide Cittaro davide.cittaro at ifom-ieo-campus.it

Hi all, Is there a way to dump the current packages installed on a machine and use it do install/uninstall packages on other machines? I've configured one at install time but to speed up other installations I would like to install default packages and then install/uninstall some starting from my first machine configuration... thanks d PS Oh, I'm going to RTFM too... but I'm

...directory, this because gcc shipped with CentOS 5.2 is 4.1. I've then noticed that my executable links /usr/lib64/libgomp.so, installed with gcc 4.1 from CentOS rpms... Is CentOS default compiler OpenMP ready? Does this mean I don't have to compile my own compiler? Thanks d Davide Cittaro davide.cittaro at ifom-ieo-campus.it

I am planning to use ZFS on my Centos 5.2 systems. The data I am storing is very large text files where each file can range from 10M to 20G. I am very interested on the compression feature of ZFS, and it seems no other native Linux FS supports it. My question are: Is ZFS stable? How does it scale for very large filesytems, ie, 2TB to 9TB? How is the performance of fuse? I plan to use it on my

Hi all, I've installed CentOS 5.2 on a sun x2250. The installer goes fine and I can setup my root with lvm on /dev/ mapper/isw_xxxxxxxx_Volume0, that is the hardware RAID1 for two disks available. As the system boots lvm complains of a duplicate PV and decides to use /dev/sda, so the physical disk, not the raid device... I see with surprise that the raid device is missing! Needless to