search for: chr20

Displaying 3 results from an estimated 3 matches for "chr20".

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2013 Jun 26
2
Error on executing functions from installed package
...in "clRes" > clRes = clusterApplyLB(cl, Chrs, profilingChr, GenoRanges = GenoRanges, Sample = Sample) > class(clRes) [1] "list" > clRes [[1]] S4 Object of class GElist; 14 features start : 14350 69251 84185 116264 153924 end : 18349 73250 88184 120263 157923 chr : chr20 chr20 chr20 chr20 chr20 strand : * * * * * binscore : NA > chrcomb <- sapply(result, function(x) rbind(x)) Error in rbind(x) : no method for coercing this S4 class to a vector The above code is part of a function. If I run this code interactively or by sourcing the script it runs fine. How...
2012 Jun 21
2
Simple Question?
...chr5 180915260 6 chr6 171115067 7 chr7 159138663 8 chrX 155270560 9 chr8 146364022 10 chr9 141213431 11 chr10 135534747 12 chr11 135006516 13 chr12 133851895 14 chr13 115169878 15 chr14 107349540 16 chr15 102531392 17 chr16 90354753 18 chr17 81195210 19 chr18 78077248 20 chr20 63025520 21 chrY 59373566 22 chr19 59128983 23 chr22 51304566 24 chr21 48129895 I want to drop the "chr" and order the chrom column in ascending order with X & Y at the end. I have tried converting the chrom into a character vector and using the strsplit function, but the...
2011 Apr 15
1
Whole genome searching of 100bp "D" sequence
...t;chr4", "chr5", "chr6", "chr7", "chr8", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrX", "chrY") #access/group the by subset of annotation annotGr <- exons(txdb) #annotGr <- cds(txdb) wholeGenomeMatch <- function() { for(i in chrList) { #matches on plus strand matches.plus.strand <- m...