Displaying 4 results from an estimated 4 matches for "chr17".
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chr1
2011 Dec 21
1
Looping over files
Hi,
?I have a list of files in one of my working directories:
"chr17.chunk1.dose.fvd"
"chr17.chunk1.dose.fvi"
"chr17.chunk1.prob.fvd"?
"chr17.chunk1.prob.fvi"?
...........
.........
........
"chr17.chunk10.dose.fvd"
"chr17.chunk10.dose.fvi"
"chr17.chunk10.prob.fvd"
"chr17.chunk10.prob...
2012 Sep 15
2
qplot: plotting precipitation data
...12267450 12268076 12
6 chr11 12276675 12277051 7
> dput(mydata)
structure(list(chrom = structure(c(3L, 3L, 3L, 3L, 3L, 3L), .Label =
c("chr1",
"chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
"chr17", "chr18", "chr19", "chr2", "chr3", "chr4", "chr5", "chr6",
"chr7", "chr8", "chr9", "chrX"), class = "factor"), start = c(5291000L,
10988025L, 11767950L, 11840900L, 12267450L...
2012 Jun 21
2
Simple Question?
...chr3 198022430
4 chr4 191154276
5 chr5 180915260
6 chr6 171115067
7 chr7 159138663
8 chrX 155270560
9 chr8 146364022
10 chr9 141213431
11 chr10 135534747
12 chr11 135006516
13 chr12 133851895
14 chr13 115169878
15 chr14 107349540
16 chr15 102531392
17 chr16 90354753
18 chr17 81195210
19 chr18 78077248
20 chr20 63025520
21 chrY 59373566
22 chr19 59128983
23 chr22 51304566
24 chr21 48129895
I want to drop the "chr" and order the chrom column in ascending order with
X & Y at the end.
I have tried converting the chrom into a character vector...
2011 Apr 15
1
Whole genome searching of 100bp "D" sequence
...quot;chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8",
"chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16",
"chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrX", "chrY")
#access/group the by subset of annotation
annotGr <- exons(txdb)
#annotGr <- cds(txdb)
wholeGenomeMatch <- function()
{
for(i in chrList)
{...