Displaying 6 results from an estimated 6 matches for "cholesky2".
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cholesky
2006 May 12
2
reusing routines
I've created some Splus code for a microarray problem that
- needed to be in C, to take advantage of some sparse matrix
properties
- uses a cholesky decompostion as part of the computation
For the cholesky, I used the cholesky2 routine, which is a part of the
survival library. It does just what I want and I'm familiar with it (after
all, I wrote it).
In Splus, this all works fine. A colleague working on the same problem
prefers R; things don't work there. The dyn.load command complains that
the routine is...
2003 Oct 30
4
packaging a package addon
I am trying to package some code that is a tweak to the survival
package. When I asked earlier, the list consensus was that it would be
best to do this as a separate package, dependent on survival.
This is proving a bit tricky.
I have some run-time and compile time concerns.
Run-time, my R code needs R code from survival, and my C code needs C
functions from survival. Will this all be
2004 Sep 20
1
compilation failed for package
...tart. I think there is something wrong in how or were the C++ or fortran compilator is installed??
Thanks, Geir S.
gcc -shared -L/usr/local/lib -o survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart2.o agmart.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o cox_Rcallback.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o survreg3.o survreg4.o sur...
2005 Aug 29
0
Core dump during lazy loading of "survival" at installation time (PR#8106)
...lude
-I/usr/local/
include -fPIC -g -O2 -c survreg5.c -o survreg5.o
gcc -shared -fPIC -Wl,-Bsymbolic -L/bi/arch/lib -L/usr/local/lib -o
surv
ival.sl agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart.o agmart2.o
ags
core.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o
c
holesky3.o chsolve2.o chsolve3.o cox_Rcallback.o coxdetail.o coxfit2.o
coxfit5.o
coxmart.o coxph_wtest.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o
pyear
s2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o
survin
dex2.o survindex3.o survreg2.o survreg3.o survreg4.o...
2004 Sep 21
0
SV: compilation failed for package
...d 1 exit status
Resolution by updating binutils or installing older gcc-* RPMs instead of
3.4.1.
>
>
> gcc -shared -L/usr/local/lib -o survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart2.o agmart.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o cox_Rcallback.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o survreg3.o survreg4.o sur...
2005 Apr 07
3
R-beta 2004-04-07 build failed on AIX
...bnoentry -Wl,-bexpall
-Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall
-Wl,-bI:/SFS/user/ry/liawand/R/Rbuild/etc/R.exp -L/usr/local/lib -o
survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart.o
agmart2.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o
chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o cox_Rcallback.o
coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o coxscho.o coxscore.o
dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o
survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o
survreg3.o survreg4.o sur...