Displaying 3 results from an estimated 3 matches for "chlorobi".
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chloro
2011 Apr 06
1
Creating a symmetric contingency table from two vectors with different length of levels in R
..."Amphibia"
"Anthozoa" "Aquificae (class)"
and so on .........
98 Levels: Aconoidasida Actinobacteria (class) ....
and the other vector has 105 levels
TotalData1$Taxa.2
[1] Flavobacteria Proteobacteria
Bacteroidetes/Chlorobi group Bacteria
[5] Epsilonproteobacteria Epsilonproteobacteria
Epsilonproteobacteria
and so on ..........
105 Levels: Acidobacteria Aconoidasida Actinobacteria (class) ....
Now I want to create a symmetric contingency table.
Any quick idea will be really helpful.
Best regards,...
2010 Oct 28
1
Heatmap construction problems
...whatsoever. I am trying to generate a heatmap of the following data:
Phylum,AI,AJT,BY,GA,Grt,Sm
Acidobacteria,0.5,0.7,2.7,0.1,2.6,1.0
Actinobacteria,33.7,65.1,9.7,2.0,3.9,2.1
Bacteroidetes,9.7,5.6,0.7,13.2,41.1,21.6
CCM11b,0.0,0.0,0.0,0.0,0.0,0.1
Chlamydiae,0.1,0.1,0.0,0.0,1.0,0.2
Chlorobi,0.0,0.0,0.0,0.0,0.7,1.0
Chloroflexi,0.1,0.2,0.6,0.2,0.8,0.6
Cyanobacteria,18.7,0.0,1.0,1.5,0.9,0.3
Ellusimicrobiales,0.0,0.0,0.0,0.0,0.0,0.0
Firmicutes,1.0,7.6,8.3,31.9,2.1,6.9
Gemmatimonadetes,5.0,0.3,0.3,0.0,0.1,0.0
GN02,0.0,0.0,0.0,0.0,0.0,0.5
Nitrospirae,0.0,0.2,1.1,0.0,0.0,0.0
NKB19,0....
2013 Mar 19
1
write random sampling as table output
...ydiae Deferribacteres GN12 Hyd24-12 KSB1 PAUC34f SC4 SPAM Thermi WPS-2 ZB3 AD3 Elusimicrobia GAL15 ABY1_OD1 OP9 Fusobacteria HDBW-WB69 OP11 WS1 SR1 ZB2 AC1 OP3 OP8 NC10 NKB19 TM7 WS3 Gemmatimonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlorobi Firmicutes Nitrospirae Chloroflexi Verrucomicrobia Alphaproteobacteria Betaproteobacteria Deltaproteobacteria Gammaproteobacteria uncl.Proteobacteria Actinobacteria Bacteroidetes Cyanobacteria Planctomycetes unclassified
Gi10Sep12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002583979 0...