Displaying 5 results from an estimated 5 matches for "chlamydia".
2010 Oct 28
1
Heatmap construction problems
...have any computer program experience
whatsoever. I am trying to generate a heatmap of the following data:
Phylum,AI,AJT,BY,GA,Grt,Sm
Acidobacteria,0.5,0.7,2.7,0.1,2.6,1.0
Actinobacteria,33.7,65.1,9.7,2.0,3.9,2.1
Bacteroidetes,9.7,5.6,0.7,13.2,41.1,21.6
CCM11b,0.0,0.0,0.0,0.0,0.0,0.1
Chlamydiae,0.1,0.1,0.0,0.0,1.0,0.2
Chlorobi,0.0,0.0,0.0,0.0,0.7,1.0
Chloroflexi,0.1,0.2,0.6,0.2,0.8,0.6
Cyanobacteria,18.7,0.0,1.0,1.5,0.9,0.3
Ellusimicrobiales,0.0,0.0,0.0,0.0,0.0,0.0
Firmicutes,1.0,7.6,8.3,31.9,2.1,6.9
Gemmatimonadetes,5.0,0.3,0.3,0.0,0.1,0.0
GN02,0.0,0.0,0.0,0.0,0.0,0.5
Nitrospira...
2007 Nov 26
1
visualizing nucleotide sequence properties
Hi there,
I am looking for R-packages that can help me visualize properties on
nucleotide sequences. I want to display sequences in the 1-100K base range
as lines and plot features above and below those lines.
Any ideas would be welcome.
Thanks,
Bernd
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2003 Sep 12
2
Prebinding for DragonFly/FreeBSD-4
I created patch for DragonFly/FreeBSD-4 for prebinding, based on
mdodd@'s patch for FreeBSD-5.
The main difference (apart from the target platform) is that the linker
needn't be patched. Rtld now uses a hash function to get an unique ID
for every ELF object.
This has been tested under DragonFly, but should run on FreeBSD-4 too.
Feedback appreciated :)
cheers
simon
--
/"\
2008 Dec 09
2
motif search
Hi,
I am very new to R and wanted to know if there is a package that, given
very long nucleotide sequences, searches and identifies short (7-10nt)
motifs.. I would like to look for enrichment of certain motifs in
genomic sequences.
I tried using MEME (not an R package, I know), but the online version
only allows sequences up to MAX 60000 nucleotides, and that's too short
for my needs..
2013 Mar 19
1
write random sampling as table output
Hello,
I have a data matrix consists of species as columns and sites as rows.
N Chlamydiae Deferribacteres GN12 Hyd24-12 KSB1 PAUC34f SC4 SPAM Thermi WPS-2 ZB3 AD3 Elusimicrobia GAL15 ABY1_OD1 OP9 Fusobacteria HDBW-WB69 OP11 WS1 SR1 ZB2 AC1 OP3 OP8 NC10 NKB19 TM7 WS3 Gemmatimonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlo...