search for: chiptyp

Dear all, I am a PhD student working with Affymetrix HGU133atag array for analyzing the Latin square experiment. I was trying to generate gene expression index for hgu133atag array for PDNN model. While extracting the chiptype specific data structure, I got the following error- > library(affypdnn) Loading required package: affy Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation(&quot...

...ot;QC.begin.Rnw")); ## replace title, date, author QCb <- sub("@TITLE@", title, QCb); QCb <- sub("@DATE@", date, QCb); QCb <- sub("@AUTHOR@", author, QCb); ## dataset info numtrees <- 6; chipname <- "Test3"; chiptype <- "GeneChip"; QCb <- sub("@DATASET@", dataset, QCb); QCb <- sub("@NUMTREES@", numtrees, QCb); QCb <- sub("@CHIPNAME@", chipname, QCb); QCb <- sub("@CHIPTYPE@", chiptype, QCb); write(QCb, file.path(docdir, &quo...

...e immediate need I have right now is that untar an archive to inst/testScripts/. The reason why I need this is that a package can only contain pathnames of length <= 100 characters (restriction in the tar file format), and mine are longer than that, e.g. aroma.affymetrix/inst/testScripts/system/chipTypes/Mapping50K_Hind240,Xba240/test20080730,100K,BPN,alleleSpecific.R [115 chars]. See also http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora/aroma.affymetrix-00check.html . One strategy is to create a local tar file referring to files system/chipTypes/Mapping50K_Hind240,Xba240/test2...

...front buffer In dmesg output I see: agp0: trying to bind into stolen memory Looking at the Xorg.0.log, the xf86-video-intel driver and the drm and dri drivers seem to initialize OK. Grepping through the source, this error seems to originate in /usr/src/sys/pci/agp_i810.c; if ( sc->chiptype != CHIP_I810 ) { if ( (offset >> AGP_PAGE_SHIFT) < sc->stolen ) { device_printf(dev, "trying to bind into stolen memory"); return EINVAL; } [disclaimer: I'm not a software engineer by educati...