Displaying 2 results from an estimated 2 matches for "chemmine".
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chemminer
2018 Feb 07
1
release build of ChemmineR failing
The release version of ChemmineR is failing on windows. It seems to be a
build script issue though, possibly something on your side. The package
was building fine a few weeks ago and I have not modified it. Can you
please have a look? Thanks.
"C:/Users/BIOCBU?1/BBS-3?1.6-B/R/bin/Rscript" -e "library(rmarkdown);...
2011 Mar 11
0
is gzcon w/ urls not implemented or used differently on linux?
...url("ftp://ftp-private.ncbi.nlm.nih.gov/pubchem/.fetch/8897497837079742771.sdf.gz"))
sdf <- readLines(z)
close(z)
On linux it produces the following error:
Error in readLines(z) : cannot open the connection
The non-gzipped version works flawlessly on linux:
con <- url("http://chemmine.ucr.edu/ChemMineToolsV2/static/example_db.sdf")
sdf <- readLines(con)
close(con)
As an analog, gzcon does work with non-url files on linux:
system("wget ftp://ftp-private.ncbi.nlm.nih.gov/pubchem/.fetch/8897497837079742771.sdf.gz")
z <- gzcon(file("8897497837079742771.sdf...