search for: changepoint

Hi, all, I'd like to find one or more changepoints in a dataset eg for data like 0.9 1 0.8 0.8 0.85 0.3 0.9 0.9 0.9 1.1 0.3 is unlikely a changepoint but for data like 0.9 1 0.8 0.8 0.85 0.3 0.2 0.2 0.1 0.2 0.3 0.3 is a change point I am wondering is there any function can do changepoint analysis? Ying Fan -.-.-.-.-.-.-.-...

Hello Does anyone know how to get the p values for changepoints in the "changepoint" package? There is guidance in the CRAN vignette https://cran.r-project.org/web/packages/changepoint/changepoint.pdf but I can't make it work to get the p value out... Thanks Nick Wray [[alternative HTML version deleted]]

Hello, I would like to evaluate the relationship between flows and phytoplankton abundance (or Chlorophyll a concentrations) using a changepoint analysis.? Specifically, I have two study questions: Study Question 1: Are there certain flow thresholds that result in spikes in phytoplankton abundance? Study Question 2: Are the duration of certain flows important for phytoplankton abundance (e.g., would a certain flow value need to be reached...

Dear All, I'm trying to do the estimation in a changepoint regression problem via R, but never found any suitable function which might help me to do this. Could someone give me a hand?on this matter? Thank you.

Hello The other say I posted a question about altering confidence limits in the seqMK() function in the pheno package. I didn't get any bites but in any case I've been trying to use this function. It seems to me to give very odd results - sometimes identifying 8 or 9 changepoints in a relatively short vector of maybe 40 elements, and at other times not giving any changepoints at all, despite visually there appearing to be changepoints and other changepoint algorithms (pettitt etc) saying that there are other changepoints. Apart from the cran vignette there doesn't see...

...n the past, but started having trouble with them yesterday. I just downloaded R 2.13.0 this morning, and was able to make some pngs earlier this morning. Now I am trying to remake them, but get the same error message I got yesterday: > u='in' > w=10.5 > h=8 > png('winbugs changepoint graphs ind hibs gt 400 p%02d.png',height=h,width=w,res=300,units=u) Error in png("winbugs changepoint graphs ind hibs gt 400 p%02d.png", height = h, : unable to start png() device In addition: Warning messages: 1: In png("winbugs changepoint graphs ind hibs gt 400 p%02d.png&qu...

I am trying to understand my population abundance data and am looking into analyses of change point to try and determine, at approximately what point do populations begin to change (either decline or increasing). Can anyone offer suggestions on ways to go about this? I have looked into bcp and strucchange packages but am not completely convinced that these are appropriate for my data. Here is

..." (plots 1, 4, 5 and 6), due to incidents with the measuring sensors (basically someone touching the sensor). I need to revert those changes to have a plot without unreal measurements, so make those fragments go back to its original pattern before the jump. I have used the function cpt.mean {changepoints} so I can identify the jumps and the mean of each segment. Now I don't know how to automatically revert the jumps, probably subtracting one higher fragment mean by the mean of the previous one. Does it make sense? Example of data set TIMESTAMP variable diameter...

Hello does anyone know how to set the confidence level within the seqMK() function in the pheno package. It seems to be set automatically at 0.05 and there seems to be neither an input function to set a different level, as there are with some changepoint functions, nor an output to give one the p-value of the changepoint identification which you get with functions ie func$p_value etc ... Thanks Nick Wray [[alternative HTML version deleted]]

dear R users, I am pleased to announce that segmented 2.1-0 is now available on CRAN. segmented focuses on estimation of breakpoints/changepoints of segmented, i.e. piecewise linear, relationships in (generalized) linear models. Starting with version 2.0-0, it is also possible to model stepmented, i.e. piecewise constant, effects. In the last release both models may be fitted via a formula interface, such as segreg(y ~ seg(x1, npsi=2)...

dear R users, I am pleased to announce that segmented 2.1-0 is now available on CRAN. segmented focuses on estimation of breakpoints/changepoints of segmented, i.e. piecewise linear, relationships in (generalized) linear models. Starting with version 2.0-0, it is also possible to model stepmented, i.e. piecewise constant, effects. In the last release both models may be fitted via a formula interface, such as segreg(y ~ seg(x1, npsi=2)...

Dear friends. I would like to link an object file made in C. Dyn.load rather wants to link a whole library and I only wanted to link this small object file. I followed instructions given for S - by Clive Loader in his software for changepoint handling and it is his object file I made from http://cm.bell-labs.com/cm/ms/departments/sia/clive/smcp.shar Any dirty tricks or easy oversights ? Yours Troels Ring, MD tring at mail1.stofanet.dk Department of Nephrology Aalborg Hospital Aalborg Denmark -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

I am looking for R code to be able to fit a linear-linear piecewise model with person-specific changepoint. I have searched the web, but have not been able to locate any code. Below is my attempt at some code: chgpt = function(a1,a2,a3,gam,wave){ yht=numeric(10) y1=(wave <= gam)*(a1+(a2*wave)) y2=(wave > gam)*((a1+(a2-a3)*gam)+a3*wave) yhat=y1+y2 return(yht) } nl.dat <- nlme(y ~ chgpt(a1,a2...

Dear R-Help list, I have a nonlinear least squares problem, which involves a changepoint; at the beginning, the outcome y is constant, and after a delay, t0, y follows a biexponential decay. I log-transform the data, to stabilize the error variance. At time t < t0, my model is log(y_i)=log(exp(a0)+exp(b0)) at time t >= t0, the model is log(y_i)=log(exp(a0-a1*(t_i - t0))+exp(b0...

Hi, I am having trouble installing a previous version of a package, and multiple version of the package in R 2.12 or 2.15. I have download the tar.gz packages from the CRAN archive, and created an folder holding all the files. install.packages("changepoint_0.3.tar.gz", lib="~/Rtools/dir/of/pkgs/", repos=NULL, dependencies=FALSE, contriburl="~/Rtools/dir/of/pkgs/changepoint_0.3.tar.gz", installWithVers= TRUE) I have received several different errors, depending on which version of R I am using Version 2.12: warning: unable t...

...s from this thread.... > > > Dear friends. I would like to link an object file made in C. > > Dyn.load rather wants to link a whole library and I only wanted to > > link this small object file. I followed instructions given for S - > > by Clive Loader in his software for changepoint handling and > > it is his object file I made from > > http://cm.bell-labs.com/cm/ms/departments/sia/clive/smcp.shar That url should work. The smcp.shar archive was specific for simulations in an Ann.Stat. paper a couple of years ago, and the interface would need rewriting to work on...

Hi, How do I anchor z=0 to the white color in a levelplot so that the color changes from cyan to magenta precisely as z changes from negative to positive? Also is it easy to change color scheme, say to blue/red as it's more dramatic? Is there a better function for showing heatmap with a color bar? Thanks in advance for any help, I've played with image, heatmap and levelplot a little and

...se the same file and randomization every year. We are interested in the long term effect of the treatment. - Data should be considered as repeated measurements over time (years)? In multcomp package: - What is the equivalence between the tests proposed ("Sequen", "AVE", "Changepoint", "Williams", "Marcus", "McDermott") and the tests agronomist are used to do: LSD (least significant difference), Duncan multiple range test, Scheffe, S-N-K (Student-Newman-Keuls)? Thanks a lot for your interest. Jorge Lampurlan?s Agronomist >> Is it po...

Hi to all, I am trying to run breakpoints() on a fairly large sample (>10.000 observations). The process is very slow, any idea on how to speed this up? I have tried the hpc="foreach" parameter, but this didn't work at all when I tried to run it on a smaller sample. breakpoints(x ~ x.l1 + x.l2 + X.l3 + x.l4 + x.l5 + x.l6 + x.l7 + x.l8 + y.l1 + y.l2 + y.l3 + y.l4 + y.l5 + y.l6

Hi all, I've got a problem with the nls function. I have an adjustment which works when I fix one of the argument of my function (Xo=150) : *Xo*=150 f<- function (tt*,Xo*,a,b) ifelse(tt<*Xo*,a*exp(-b**Xo*),a*exp(-b*tt)) ajust<-nls(RER~f(tt,*Xo*,a,b),data=data.frame(tt=Ph2[,2*k],RER=Ph2[,2*k+1]),start=list(a=0.5,b=0.014)) But, when I use it as a "normal" parameter (and