search for: cg27433479

...hod p.adjust: > setwd("C:/work/Methylation/IMA/GM/siteLists") > > hypTable <- read.delim("hypernormal vs others.txt") > pList <- hypTable$p > names(pList) <- hypTable$site > > adjusted <- p.adjust(pList, method="BH") > adjusted[1] cg27433479 0.05030589 > > pList[1]*nrow(hypTable)/1 cg27433479 0.09269194 I tried to recreate this is a small example of a vector of 5 p values but everything worked as expected there. I was wondering if there is some subtle difference about how p.adjust operates? Is there something more complicat...