search for: cels

Hi all, I have a total newbie question, but I could really use some help. I need to read in this file: SampleID Disease E-CBIL-28-raw-cel-1435145228.cel 1 E-CBIL-28-raw-cel-1435145451.cel 2 E-CBIL-28-raw-cel-1435145479.cel 2 E-CBIL-28-raw-cel-1435145132.cel 3 E-CBIL-28-raw-cel-1435145417.cel 3 E-CBIL-28-raw-cel-1435145301.cel 2 E-CBIL-28-raw-cel-1435145558.cel 1

Hi, On Asterisk 16.11.1 when enabling cel I get error with BRIDGE_START and BRIDGE_END events zone-s*CLI> module reload cel The module 'cel' reported a reload failure     -- Reloading module 'cel' (CEL Engine) [2020-07-10 17:57:01] ERROR[16163]: cel.c:428 ast_cel_str_to_event_type: Unknown event name 'BRIDGE_START' [2020-07-10 17:57:01] ERROR[16163]:

Hi, R 2.5.0 isn't auto-completing paths properly as it used to. E.g. suppose I have: > dir("CEL/choe") [1] "chipC-rep1.CEL" "chipC-rep2.CEL" "chipC-rep3.CEL" "chipS-rep1.CEL" [5] "chipS-rep2.CEL" "chipS-rep3.CEL" Now if I do: ReadAffy("CEL/choe/ch<tab> # => ReadAffy("CEL/choe/chip

Hi, Is there any function to replace colProds that finds column-wise products of a matrix? Or is there any other function that would give a better solution this problem ? I have a matrix and an array, example: > a GSM1.CEL GSM2.CEL GSM1.CEL 10000_at 1 3 1 10001_at 3 3 3 > b 10000_at

Dear list, I have been searching for a week to fit a simple linear model to my data. I have looked into the previous posts but I haven't found anything relevant to my problem. I guess it is something simple...I just cannot see it. I have the following data frame, named "data", which is a subset of a microarray experiment. The columns are the samples and the rows are the probes. I

On Wed, Jul 22, 2020 at 12:44 PM Administrator <admin at tootai.net> wrote: > No one on this ? > > Le 10/07/2020 à 18:06, Administrator a écrit : > > Hi, > > > > On Asterisk 16.11.1 when enabling cel I get error with BRIDGE_START > > and BRIDGE_END events > > > > zone-s*CLI> module reload cel > > The module 'cel' reported a

Dear list, I need to read a big txt file (around 130Mb; 23800 rows and 49 columns) for downstream clustering analysis. I first used "Tumor <- read.table("Tumor.txt",header = TRUE,sep = "\t")" but it took a long time and failed. However, it had no problem if I just put data of 3 columns. Is there any way which can load this big file? Thanks for any suggestions!

Dear Help, After loading the pd.Citrus library and checking the DataFrame, I ran > the R code for: > > 1) 'oligo' > > > > {> library(pd.citrus) > Loading required package: RSQLite > Loading required package: DBI > > data(pmSequence) > > > show(pmSequence) > DataFrame with 341730 rows and 2 columns > fid sequence > <integer>

Hi, I have built R (current development version) and BioConductor 1.7 with portland group compiler on a AMD Opteron. When I ran qc assessment on Affymetrix latin square data set, I got the following output, Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view,

No one on this ? Le 10/07/2020 à 18:06, Administrator a écrit : > Hi, > > On Asterisk 16.11.1 when enabling cel I get error with BRIDGE_START > and BRIDGE_END events > > zone-s*CLI> module reload cel > The module 'cel' reported a reload failure >     -- Reloading module 'cel' (CEL Engine) > [2020-07-10 17:57:01] ERROR[16163]: cel.c:428 >

I am experiencing data loss on a CIFS share with Samba 3.6.3. I am running Debian Sid on x86. I mount the share with the following line in my fstab: //server/share /mnt/share cifs auto,users,rw,gid=50,dir_mode=0775,file_mode=0777,domain=DOMAIN,credentials=/root/share.credentials The user in the credential file is in the proper domain. GID 50 is "staff", which my user is a member

Hello, I have a data frame with one column: > remove V1 1 ABAFT_g_4RWG569_BI_SNP_A10_35096 2 ABAFT_g_4RWG569_BI_SNP_B12_35130 3 ABAFT_g_4RWG569_BI_SNP_E09_35088 4 ABAFT_g_4RWG569_BI_SNP_E12_35136 5 ABAFT_g_4RWG569_BI_SNP_F11_35122 6 ABAFT_g_4RWG569_BI_SNP_F12_35138 7 ABAFT_g_4RWG569_BI_SNP_G07_35060 8 ABAFT_g_4RWG569_BI_SNP_G12_35140 I want to remove these 8

Hi all , I have one query. i have list of some .cel files. in my program i have to mention the path of these .cel files part of my program is, rna.data<-exprs(justRMA(filenames=file.names, celfile.path=*datadir*, sampleNames=sample.names, phenoData=pheno.data, cdfname=cleancdfname(hg18_Affymetrix U133A))) in the place of "datadir" i have to mention the character string of the

I'm having trouble setting up the function call to handle two lists of matrices. Each list has 6 matrices - Each matrix is 20x10. I need to do some basic math on corresponding matrices in each list. Here are some outputs of these lists, etc... # first list > length(qc.pm) [1] 6 > dim(qc.pm[[1]]) [1] 20 10 > qc.pm[[1]][1:4,1:4] 441-JP071707.CEL 442-JP071707.CEL

Hi there, I got a problem when trying to read in a .cel file using ReadAffy(). R codes: require(affy) ReadAffy(filenames="CH1.CEL") It failed and I got the error, Error in read.celfile.header(as.character(filenames[[1]])) : Is CH1.CEL really a CEL file? tried reading as text, gzipped text, binary, gzipped binary, command console and gzipped command console formats Also, I tried

Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many

Hi!I'm doing a little data importing from .cel files, > setwd("/home/mandova/celfiles") > mydata<-ReadAffy() Error in sub("^/?([^/]*/)*", "", filenames, extended = TRUE) : unused argument(s) (extended = TRUE) Then I tried > filenames<-paste("GSM",c(seq(138597,138617,1)),".cel",sep="") >

Hi, I am using Asterisk 11.2.0. Channel Event Logging (CEL) ist activated and running. CEL entries are logged into an mysql database. So far so good. I want to do some extra cel logging and try the following via an AGI-Script: EXEC CELGenUserEvent test In the asterisk logfile I can see the following: -- AGI Script Executing Application: (CELGenUserEvent) Options: (test) (no errors or warnings)

On Wed, 21 Oct 2020 16:15:22 -0500 Ana Marija <sokovic.anamarija at gmail.com> wrote: > Hello, > > I have a data frame with one column: > > > remove > > V1 > > 1 ABAFT_g_4RWG569_BI_SNP_A10_35096 > 2 ABAFT_g_4RWG569_BI_SNP_B12_35130 > 3 ABAFT_g_4RWG569_BI_SNP_E09_35088 > 4 ABAFT_g_4RWG569_BI_SNP_E12_35136 > 5

Hi list, I have a problem which I was stuck on for a while, and after many days still cannot find a solution to. I have a matrix, measuring m X n. An example matrix will be this: >dput(sample) structure(c(2315101, 2315102, 2315103, 2315104, 2315105, 2315107, 2315108, 2315110, 2315112, 2315114, 2315116, 2315118, 2315120, 2315122, 2315124, 2315126, 2315127, 2315128, 2315130, 2315131, 2315132,