Displaying 3 results from an estimated 3 matches for "celdata".
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cedata
2005 Jan 03
2
Memory problem ... Again
...em. Is there anyway we can configure memory
usage so that all physical memory can be utilized?
Our system is like this:
System type: IBM AIX Symmetric Multiprocessing (SMP)
OS version: SuSe 8 SP3a
CPU: 8
Memory: 64GB
The codes are as follows:
> Data <- ReadAffy(filenames = paste(HOME, "CelData/", fname, sep=""))
> eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, pmc\
orrect.method="pmonly", summary.method="liwong")
normalization: invariantset
PM/MM correction : pmonly
expression values: liwong
normalizing...Error...
2004 Dec 28
2
Configuration of memory usage
...Error: cannot allocate vector of size 594075 Kb
I got this error message while I was trying to apply dChip preprocessing
procedures for 150 Affymetrix U133v2 chips that has > 22,000 probe sets on
them. The actual codes I ran was like this:
> Data <- ReadAffy(filenames = paste(HOME, "CelData/", fname, sep=""))
> mem.limits()
nsize vsize
NA NA
> gc()
used (Mb) gc trigger (Mb)
Ncells 530216 14.2 899071 24.1
Vcells 76196137 581.4 243983468 1861.5
> eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, p...
2007 Jul 10
1
cleanup and Makevars
...oupInformation.cpp\
fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp\
fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp\
fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp\
fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp\
fusion_sdk/calvin_files/data/src/CELData.cpp\
fusion_sdk/calvin_files/data/src/DataGroup.cpp\
fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp\
fusion_sdk/calvin_files/data/src/DataSet.cpp\
fusion_sdk/calvin_files/data/src/DataSetHeader.cpp\
fusion_sdk/calvin_files/data/src/FileHeader.cpp\
fusion_sdk/calvin_files/data/src/Generi...