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2007 Mar 02
0
LIMMA contrast.matrix
...#39;s Guide 5 January 2007 PDF version. For the example show in Section 7.4 DIRECT TWO-COLOR DESIGNS (pgs. 33-34), I could not grasp the rationale in developing the contrast.matrix with these R statements (">" indicates the R command prompt): > contrast.matrix <- cbind("CD8-CD4"=c(1,0),"DN-CD4"=c(0,1),"CD8-DN"=c(1,-1)) How do we get that numbers (1,0) (0,1) and (1,-1)? This knowledge is critical to develop the correct contrasts. I would like to extend properly this concept to my experiments. Thank you very much. Roge...
2009 Apr 16
1
How can I catch errors thrown from c via the Rcpp error() function?
...Error : blah > x [1] "Error : blah\n" attr(,"class") [1] "try-error" 2. This is an example using flowClust (using real data, set up to guarantee that the error is thrown): > x <- try(res30 = flowClust(tFrame, K=30, B=1000, varNames=c('CD4', 'CD8','KI67', 'CD45RO', 'CD28', 'CD57', 'CCR5', 'CD19', 'CD27', 'CCR7', 'CD127'))) Error in flowClust(tFrame, K = 30, B = 1000, varNames = c("CD4", "CD8", : The covariance matrix is near singular! Try runn...
2008 Aug 09
2
xy plot in version 2.7.1 for Mac (PR#12520)
...4PWy0vNS+OWWJZFnt38mZqZ1vkDeZ1MfdbNsRuTX4r7vWE+Ayk QadDSRNEUfIEyVU8IL70wYqF0lPIgmHsHcK+G0l62+EoFhXic3w2b5vVpyCjrIysNiu3hthD+wtS 2lSJSbB3ZrYl9iWKkuhL5Inbh/Zvmav1l2xXxa4BE5lbvT65uHgRTbFz9IfVL1lMiwMB5vGMGC62 UeJAoykJmNwZBE3CQLGXRgzHXjJKA5O+E9i81gUfHe75dP7CjVt7v3z//d4vH5q1YX7L+gfunLOp aPz2aev2PX/v2qcl++Cd8/aePrv3zkcH5xzddEgjxnq2vcpqWu6/b2bTxvuvaRO2T3oqeO+z+8R+ Q15ajrvGPnl0prX4C7PdDAXR0SOz7+unyFqc3D2Qxe1O+AE1lfROpAob/evF3mG2on5LxIFkI1Ry G9UCzgKmwTCSDWT3cnHbJdqRgSTcqhhw8NjwhXM7VLG4V5IgC4/4SJtG3E3Q9Knlt9eO9ZYtmdu4 YEKN7gEn7SZ8M3/fI0OZgG8hO1FHjbUsQ0qmywANIJETOA8wCTATsA2wB2Aka0SzCHQt4DDgCsBI Pim58+FhvhDIZ...