search for: ccgc

...to find out how much memory is allocated). I don't have any other programs open, so I should certainly be able to address more memory than that. Any ideas? TIA Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623

...)" $major [1] "2" $minor [1] "1.0" $year [1] "2005" $month [1] "03" $day [1] "17" $language [1] "R" James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

.... I can certainly hard code the first chunk to find the .Rdata file, but I have to imagine there is a much more elegant way to do this. Any suggestions? Best, Jim -- James W. MacDonald, MS Biostatistician UMCCC cDNA and Affymetrix Core University of Michigan 1500 E Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623

...language R version.string Version 2.3.0 alpha (2006-03-29 r37607) Best, Jim James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

...Windows XP Professional (build 2600) Service Pack 1.0 Search Path: .GlobalEnv, package:methods, package:stats, package:graphics, package:utils, Autoloads, package:base James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623

I've tried looking at ?colors and ?palette and if I'm understanding it correctly, I'm supposed to type in (for example) palette(rainbow(13)) before I type in my plot (of 13 lines) if I want 13 different colors. But this does not work. Other things that i have tried besides rainbow give me errors. Am I just doing something completely wrong? Anna

...es from the package.skeleton() help page. I believe there should be two data type and two function type .Rd files, but instead they are all of the data type. Best, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

...language R version.string R version 2.4.0 alpha (2006-09-10 r39242) TIA, Jim James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

...language R version.string Version 2.3.0 Under development (unstable) (2006-01-01 r36947) James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

...: C attached base packages: [1] stats graphics grDevices datasets utils methods base loaded via a namespace (and not attached): [1] tcltk_2.7.0 tools_2.7.0 -- James W. MacDonald, MS Biostatistician UMCCC cDNA and Affymetrix Core University of Michigan 1500 E Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623

...s coff make[3]: *** [dllversion.o] Error 1 make[2]: *** [../../bin/R.dll] Error 2 make[1]: *** [rbuild] Error 2 make: *** [all] Error 2 Best, Jim James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.

All, Anybody can tell how to export a R plot onto Word (or Power Point)? Many thanks in advance. -MY

Aren't the headers usually in the devel package (e.g., fftw-devel-2.1.5-0.dag.rh73.i386.rpm)? You might try installing the devel package too. HTH Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> Rick Bilonick <rab at nauticom.net> 10/07/03 03:39PM >>> I'm still having problems installing rimage - the installation can't find the fftw headers. As suggested, I installed the fftw rpm (for RH 9 from freshrpms). It installed...

Hello, I've a question about the fdr method in p.adjust: What is the threshold of the FDR, and is it possible to change this threshold? As I understand the FDR (please correct) it adjusts the p-values so that for less than N% (say the cutoff is 25%) of the alternative hypothesis the Null is in fact true. thanks a lot for help, +regards, Arne

Is there any way to control the format of the axis label numbers on a plot? More specifically, I have some plots that get axes with label numbers in exponential format, and I'd like to change that to non-exponential. Thanks!! -- M. Edward (Ed) Borasky, MS, MNLP, NST, FBG, PGS & PTA znmeb at borasky-research.net http://www.borasky-research.net

Hi all, I have tried to compute a p-value for a hypergeometric distribution as: dhyper(x,k,l,n) + phyper(x,k,l,n,lower.tail=FALSE) and sometimes obtained negative values. Do you know if it is because a round error or am I doing something wrong? Thanks in advance, Aurora

Note that package.descripton() is deprecated in R-1.9.0. You have to use packageDescription() instead. Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> Sundar Dorai-Raj <sundar.dorai-raj at PDF.COM> 03/30/04 10:51AM >>> You can access this from within R using package.description("MASS")[["License"]] package.description attempts to parse the DESCRIPTION file. -sund...

...ppress the axes using e.g., for the x-axis xaxt="n" in your plotting function call, and then add your own axis using the axis() function (see ?axis). HTH, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "Phil" <morenzp at rogers.com> 06/16/04 10:12 PM >>> Hi all, I'm coming to R from Matlab and I'm finding it difficult to find a good introduction to graphics in R. (The best I've found so far is Ch. 4 of Emmanuel Pa...

...sage: There is no package called 'KEGG', version 1.6.4 in: library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, TIA, Jim -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109

I am running R 2.0.0, GOstats 1.1.1 and GO 1.7.0, and when I use the function GOHyperG, I have the following error: w1<-as.list(hgu95av2LOCUSID) w2<-unique(unlist(w1)) set.seed(123) myLL<-sample(w2,100) xx <- GOHyperG(myLL) Error in mget(x, env = GOTERM, ifnotfound = NA) : recursive default argument reference In fact first I tried this function with my locusId ' list (with