search for: causalities

Hi useRs.. I cant figure out how to test for causality using causality() in vars package I have two datasets (A, B) and i want to test if A (Granger)cause B. How do I write the script? I dont understand ?causality. How do I get x to "contain" A and B. Further using the command VAR() to specify x, I dont either understand. Kind regards Tobias -- View this message in context:

Dear Community, this is my first programming in R and I am stuck with a problem. I have the following code which automatically calculates Granger causalities from a variable, say e.g. "bs" as below, to all other variables in the data frame: log.returns<-as.data.frame( lapply(daten, function(x) diff(log(ts(x))))) y1<-log.returns$bs y2<- log.returns[,!(names(log.returns) %in% "bs")] Granger<- function(y1,y2) {models=lapply...

Hi, I am using the sim1000G R package to simulate data for case/control study. I can not figure out how to manipulate this code to be able to generate 10% or 50% causal SNPs in R. This is whole code provided as example on GitHub: library(sim1000G) vcf_file = "region-chr4-357-ANK2.vcf.gz" #nvariants = 442, ss=1000 vcf = readVCF( vcf_file, maxNumberOfVariants = 442 ,min_maf =

Dear Community, For my masters thesis I need to perform a multivariate granger causality test. I have found a code for bivariate testing on this page (http://www.econ.uiuc.edu/~econ472/granger.R.txt), which I think would not be useful for the multivariate case. Does anybody know a code for a multivariate granger causality test. Thank you in advance. Best Regards -- View this message in context:

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Dear Community, I am new to R and have a question concerning the causality () test in the vars package. I need to test whether, say, the variable y Granger causes the variable x, given z as a control variable. I estimated the VAR model as follows: >model<-VAR(cbind(x,y,z),p=2) Then I did the following: >causality(model, cause="y"). I thing this tests the Granger causality of

I am using the vars package and it calls a function causality() which then calls something called .duplicate. I had to modify the causality function slightly for my purposes and I called it my.causality() but now the .duplicate function is no longer known to the my.causality function. I'm fairly certain that this is due to my lack of expertise in R but if someone could tell me how to make the

Hello dudes. I'm developing VAR analysis based on suggestions made by Horváth in its paper Canonical Correlation Analysis and Wiener-Granger Causality Tests. That's the reason I'm looking for if there's any R package to develop Wiener - Granger Causality Test. Thanks a lot for your unvaluable help. Regards from Mexico [[alternative HTML version deleted]]

Hi Berina, I'm not an expert on genetics. I haven't looked at the package. And I've only glanced at your question. So, this is probably not the best response. But as no one else has responded, here's some comments: (1) Have you checked if there's a function in the package to do what you want? The remainder of these questions assume that you have, and the answer is no. (2)

Dear R Users, Can someone point me to a R package which will help me optimally choose a lag for Granger Causality testing ? Many thanks in advance, Tolga Generally, this communication is for informational purposes only and it is not intended as an offer or solicitation for the purchase or sale of any financial instrument or as an official confirmation of any transaction. In the event you are

Hi folks, I am trying to perform a Granger causality analysis with panel data. There are some packages around for panel data analysis and Granger causality. However, I have found neither a package for both panel data and Granger causality nor any R procedures (homogenous/heterogenous causality hypotheses, related tests such as Wald, unit root tests etc.). Of course, someone must have

...uot; the density of the underlying distribution by using the quantreg package. I hope my question is not to confusing, thank you very, very much in adavanve I appreciate every comment=) Cheers Stefan -- View this message in context: http://r.789695.n4.nabble.com/Quantile-Regression-Testing-for-Non-causalities-in-quantiles-tp4636511.html Sent from the R help mailing list archive at Nabble.com.

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Dear all, I am using the Instrumental Variable approach to estimate the causal effects of TWO endogenous variables in a Mendelian Randomization study. As long as point estimation is concerned, I have no problem: both "ivreg" in library "AER" and "tsls" in library "sem" do the job perfectly. The problems begin when I try to obtain confidence intervals for

I have a semantics question, I am reading Bowerman and O'Connell and they state that forecasting models fall into two categories, univariate and causal. My question is whether a time series regression model that relates the time series of interest to functions of time such as the day of the week or month of the year could be considered a causal model? thanks, spencer [[alternative HTML

Hi users ı cant find and also do nonlinear garnger causality R codes, Is anyone send me an example??? thanks lots of -- View this message in context: http://r.789695.n4.nabble.com/test-for-causality-tp835483p3050981.html Sent from the R help mailing list archive at Nabble.com. [[alternative HTML version deleted]]

Hi, I was wondering if there is a package/function for Panel Granger non-causality tests? I am interested in Toda-Yamamoto procedure in panel data setting. Thank you, -- View this message in context: http://r.789695.n4.nabble.com/Panel-Granger-Causality-Tests-tp4665834.html Sent from the R help mailing list archive at Nabble.com.

Hi, I was wondering if there is a package/function for Panel Granger non-causality tests? I am interested in Toda-Yamamoto like procedure for panel models. Thank you, -- View this message in context: http://r.789695.n4.nabble.com/Panel-Granger-Non-Causality-Tests-in-R-tp4666316.html Sent from the R help mailing list archive at Nabble.com.

Dear All, I'am looking for examples showing that correlation does not imply causality, the targeted audience consists of undergraduate students (their first year at the university but in the BioMathStat track). All practicals are under R. I was able to extract this from R datasets: ### begin data(sunspots) data(lynx) spots <- window(sunspots, freq = 1, start = 1880, end = 1900) lnx <-

Dear R Community, I am currently student at the Vienna University of Technology writing my Diploma thesis on causality in time series and doing some analyses of time series in R. I have the following questions: (1) Is there a function in R to estimate the PARTIAL spectral coherence of a multivariate time series? If yes, how does this work? Is there an test in R if the partial spectral