Displaying 1 result from an estimated 1 matches for "calctstatfast".
2010 May 20
1
computer out of memory when using sigpathway
...way)
YANG <- read.table("All microarray MT_LAB.txt",header=T,sep="\t")
attach(YANG)
Y <- data.frame(TF134_1_3DAK,TF134_2_3DAK,WT1_3DAK,WT2_3DAK,row.names=locus_no)
p <- c("1_trt","1_trt","0_norm","0_norm")
statList <- calcTStatFast(Y,p,ngroups=2)
hist(statList$pval,breaks=seq(0,1,0.025),xlab="p-value",ylab="Frequency",main="")
set.seed(1234)
YANG <- runSigPathway(yy,20,500,Y,p,nsim=100,weightType="constant",ngroup=2,npath=10,verbose=F,allpathway=F,alwaysUseRandomPerm=F)
#writ...