Displaying 2 results from an estimated 2 matches for "c24vsc48".
2009 Feb 12
0
Error Message: Error in dim(data) <- dim : attempt to set an attribute on NULL
...(design,file="design.txt",sep="\t",col.names=NA)
colnames(design) <- levels(TS)
#for eset put in your M values - see ?lmFit for object types
fit <- lmFit(eSet, design)
cont.matrix<-makeContrasts(s0vss24=s.0-s.24, s24vss48=s.24-s.48, s48vss96=s.48-s.96, c0vsc24=c.0-c.24, c24vsc48=c.24-c.48, c48vsc96=c.48-c.96, levels=design)
write.table(cont.matrix,file="cont.matrix.txt",sep="\t",col.names=NA)
# estimate the contrasts and put in fit2
fit2 <- contrasts.fit(fit, cont.matrix)
fit2 <- eBayes(fit2)
#print fit2 table
write.table(fit2,file="fit2.txt...
2009 Feb 19
1
Read.table not reading in all columns
...(fit2, file="fit2.txt",sep="\t",quote="",comment.char="",as.is=TRUE)
The first few lines of fit2.txt (does not include all 38 columns) looks like this:
coefficients.s0vss24 coefficients.s24vss48 coefficients.s48vss96 coefficients.c0vsc24 coefficients.c24vsc48 coefficients.c48vsc96 df.residual sigma stdev.unscaled.s0vss24
U179971039 0.058663 0.087575 0.074886 0.099245 -0.18102 0.311904 20 0.176096
empty1 -0.1296 -0.09105 0.238859 -0.25477 0.063964 0.386198 20 0.34345
empty2 0.136259 0.398073 0.158244 0.175756 -0.10171 0.356534 20 0.4...