search for: buildsrc

...en before on Windows: for some BioC packages, 'R CMD build' would produce no output at all (0 byte) and, of course, no source tarball. Even though, the code returned by the command is 0! See an example of this is here: http://bioconductor.org/checkResults/2.7/bioc-LATEST/MotIV/liverpool-buildsrc.html (the content of this page is updated every day) Note the: RetCode: 0 PackageFile: None and the lack of output! This seems to happen randomly for a couple of packages every day. Today it's for MotIV only. Last time I checked, it was charm and genefilter. Before that, they were 2...

...yle); rmarkdown::render('ChemmineR.Rmd')" 'C:\Users\BIOCBU?1\BBS-3?1.6-B\R\bin\x64\Rscript.exe" -e "library' is not recognized as an internal or external command,operable program or batch file. http://bioconductor.org/checkResults/release/bioc-LATEST/ChemmineR/tokay1-buildsrc.html Kevin [[alternative HTML version deleted]]

...ors like: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : scan() expected 'a real', got '-1.#IND' that we didn't get with previous versions of R devel and Rtools. See http://bioconductor.org/checkResults/2.10/bioc-LATEST/BGmix/moscato2-buildsrc.html for the details. (Note that the file containing the numeric values is generated during the creation of the vignette.) We don't see this error on Linux or Mac because on those platforms the C++ code will produce 'nan' or 'inf', which are supported by scan(). Thanks, H. -...

The Bioconductor build for a package DirichletMultinomial on R Under development (unstable) (2013-02-26 r62077) -- "Unsuffered Consequences" at http://bioconductor.org/checkResults/devel/bioc-LATEST/DirichletMultinomial/george2-buildsrc.html shows * creating vignettes ... ERROR ... Error: processing vignette ?DirichletMultinomial.Rnw? failed with diagnostics: chunk 21 (label = ROC-dmngroup) Error in mapply(FUN = f, ..., SIMPLIFY = FALSE) : invalid primitive operation given for dispatch Execution halted I have not been abl...

...alTest_deprecated.Rnw? ** testing if installed package can be loaded * DONE (globaltest) Why isn't this warning reported by 'R CMD check'? Also the output of 'R CMD build' is not saying anything: http://bioconductor.org/checkResults/2.9/bioc-LATEST/globaltest/wilson2-buildsrc.html even though the package was installed to re-build the vignettes. 'R CMD build' might not be the place for issuing this kind of warning though but 'R CMD check' definitely is. This is with 2.14.0 beta (2011-10-16 r57266) on 64-bit openSUSE 11.4. Thanks, H. -- Herv? Pag?s P...

...ed with > >> diagnostics: > >> chunk 1 (label=loadlib) > >> Error : package/namespace load failed for 'EBImage' > >> Execution halted > >> > >> More: > >> > http://bioconductor.org/checkResults/2.3/bioc-LATEST/EBImage/gewurz-buildsrc.html > >> > >> I noticed this already a few weeks ago (before the typo in DESCRIPTION > >> was added) and hoped it would solve "itself", but it is still there. > >> Not sure if it is an EBImage or a BioC server config problem. > >> > >&gt...

...m>' from '??meric Maschino <emeric.maschino at gmail.com>' > submitter 642781 M?nica Ram?rez Arceda <monica at probeta.net> Bug #642781 {Done: Damien Raude-Morvan <drazzib at debian.org>} [src:gradle] gradle: FTBFS: A problem occurred evaluating root project 'buildSrc'. Bug #637273 {Done: Damien Raude-Morvan <drazzib at debian.org>} [src:gradle] Gradle doesn't work with Groovy 1.8.x Changed Bug submitter to 'M?nica Ram?rez Arceda <monica at probeta.net>' from 'M??nica Ram??rez Arceda <monica at probeta.net>' > submitt...

...e. > tags 637273 + jessie Bug #637273 {Done: Damien Raude-Morvan <drazzib at debian.org>} [src:gradle] Gradle doesn't work with Groovy 1.8.x Bug #642781 {Done: Damien Raude-Morvan <drazzib at debian.org>} [src:gradle] gradle: FTBFS: A problem occurred evaluating root project 'buildSrc'. Added tag(s) jessie. Added tag(s) jessie. > tags 616865 + jessie Bug #616865 [src:libkml] libkml: deprecation of dh_pycentral, please use dh_python2 Added tag(s) jessie. > tags 616822 + jessie Bug #616822 [src:gdeskcal] gdeskcal: deprecation of dh_pycentral, please use dh_python2 Added...