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bocal
2010 Dec 01
1
procrustes results affected by order of sites in input file
...ination is based on fish data, the other is based
on invertebrate data. Ordinations were derived using metaMDS() from the
{vegan} library as follows:
fish.mds<-metaMDS(fish.data, distance="bray", k=3, trymax=100,
wascores=TRUE, trace=TRUE, zero="add")
invert.mds<-metaMDS(bugcal.a, distance="bray", k=3, trymax=100,
wascores=TRUE, trace=TRUE, zero="add"),
where fish.data and invert.data are site-by-abundance matrices for fish and
invertebrates, respectively.
I have then used protest() to test the significance between the two
ordinations:
protest.resu...