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...nfiguration on my system, and to post it to the mailing list for troubleshooting. When trying to build R version 4.3.3, in at least two places during the process it gives LaTeX errors of the form: (example 1) you should 'make docs' now ... make[1]: Entering directory '/home/btyner/R-4.3.3/doc' creating doc/NEWS creating doc/NEWS.pdf Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : unable to run pdflatex on 'NEWS.tex' LaTeX errors: ! LaTeX Error: File `pdftexcmds.sty' not found. Type X to quit or <R...

Hello, When building R from source, during the part where the 'tools' package is built, I get: make[6]: Entering directory `/home/btyner/R-3.1.1/src/library/tools/src' make[6]: Leaving directory `/home/btyner/R-3.1.1/src/library/tools/src' make[5]: Leaving directory `/home/btyner/R-3.1.1/src/library/tools/src' make[4]: Leaving directory `/home/btyner/R-3.1.1/src/library/tools' Error in .deparseOpts(control) : could n...

...? [1] 654 ?? Error in close.connection(p) : ignoring SIGPIPE signal Should I not be using pipe() in this way? Here is my sessionInfo() ?? R version 3.6.0 (2019-04-26) ?? Platform: x86_64-pc-linux-gnu (64-bit) ?? Running under: Ubuntu 18.04.3 LTS ?? Matrix products: default ?? BLAS:?? /home/btyner/R360/lib64/R/lib/libRblas.so ?? LAPACK: /home/btyner/R360/lib64/R/lib/libRlapack.so ?? locale: ? ? [1] LC_CTYPE=en_US.UTF-8?????? LC_NUMERIC=C ? ? [3] LC_TIME=en_US.UTF-8??????? LC_COLLATE=en_US.UTF-8 ? ? [5] LC_MONETARY=en_US.UTF-8??? LC_MESSAGES=en_US.UTF-8 ? ? [7] LC_PAPER=en_US.UTF-8????...

Hello, Most likely I'm doing something wrong, but am at a loss as to what the issue is. I have a clean checkout of trunk here: ?? ~/svn/r-devel/R$ svn info ?? Path: . ?? Working Copy Root Path: /home/btyner/svn/r-devel/R ?? URL: https://svn.r-project.org/R/trunk ?? Relative URL: ^/trunk ?? Repository Root: https://svn.r-project.org/R ?? Repository UUID: 00db46b3-68df-0310-9c12-caf00c1e9a41 ?? Revision: 76409 ?? Node Kind: directory ?? Schedule: normal ?? Last Changed Author: ripley ?? Last Ch...

.../dev/null will echo the string "/dev/stdin"to /dev/stdout, which is redirected to /dev/null. > > Try > > p <- pipe("cat > /dev/null", open = "w") > > instead. > > Regards, > Andreas > > 2019-12-06 02:46 GMT+01:00 Benjamin Tyner<btyner at gmail.com>: >> Not sure if this is a bug, so posting here first. If I run: >> ?? cnt <- 0L >> ?? while (TRUE) { >> ? ? ?? cnt <- cnt + 1L >> ? ? ?? p <- pipe("echo /dev/stdin > /dev/null", open = "w") >> ? ? ?? writeLine...

...))))) bquote() could be used as well lapply(c("MASS", "splines"), function(pkg) eval(bquote(library(.(pkg)), list(pkg=as.name(pkg))))) But avoiding such things is much easier. Bill Dunlap TIBCO Software wdunlap tibco.com On Mon, Jul 31, 2017 at 2:41 PM, Benjamin Tyner <btyner at gmail.com> wrote: > Thanks again Bill; I agree that substitute is overkill here. > > As an aside, for cases where someone may be tempted to use substitute(), > it seems quote() might be a safer alternative; compare > > > lapply(list(1), function(y) c(quote(y), substit...

...conditions, then sources such as the conda channel and ubuntu would need to add this enhancement. If False, then what is the next step (i.e. forum) for debugging the race condition? On 01/11/2018 07:56 AM, Ista Zahn wrote: > > > On Jan 10, 2018 8:24 PM, "Benjamin Tyner" <btyner at gmail.com > <mailto:btyner at gmail.com>> wrote: > > Thanks Keith. We checked, and indeed libopenblas is not linked > against libomp nor libgomp. We suspect this is because we used > conda to install R and OpenBLAS. So I guess we should be barking > up...

On 21/04/2019 4:56 p.m., Benjamin Tyner wrote: > Hello, > > Most likely I'm doing something wrong, but am at a loss as to what the > issue is. I have a clean checkout of trunk here: > > ?? ~/svn/r-devel/R$ svn info > ?? Path: . > ?? Working Copy Root Path: /home/btyner/svn/r-devel/R > ?? URL: https://svn.r-project.org/R/trunk > ?? Relative URL: ^/trunk > ?? Repository Root: https://svn.r-project.org/R > ?? Repository UUID: 00db46b3-68df-0310-9c12-caf00c1e9a41 > ?? Revision: 76409 > ?? Node Kind: directory > ?? Schedule: normal &...

...t the former could have their OpenBLAS omelet without breaking the OpenMP eggs, so to speak. On 01/09/2018 06:41 PM, Keith O'Hara wrote: > Do those issues still arise when OpenBLAS is compiled with USE_OPENMP=1 ? > > Keith > >> On Jan 9, 2018, at 6:03 PM, Benjamin Tyner <btyner at gmail.com> wrote: >> >> Please pardon my ignorance, but doesn't OpenBLAS still not always play nicely with multi-threaded OpenMP? (for example, don't race conditions sometimes crop up)? If so, it might be nice to have the ability to temporarily disable multi-threaded OpenM...

? Fri, 1 Mar 2024 10:46:53 -0500 Benjamin Tyner <btyner at gmail.com> ?????: > my platform info: > > Platform: x86_64-pc-linux-gnu (64-bit) > Running under: Ubuntu 22.04.4 LTS Quick things first: have you installed all the build-dependencies? apt build-dep r-base (maybe with --install-suggests? haven't tried that in a while...

...st echos is first arg, i.e. echo /dev/stdin > /dev/null will echo the string "/dev/stdin"to /dev/stdout, which is redirected to /dev/null. Try p <- pipe("cat > /dev/null", open = "w") instead. Regards, Andreas 2019-12-06 02:46 GMT+01:00 Benjamin Tyner<btyner at gmail.com>: > Not sure if this is a bug, so posting here first. If I run: > ?? cnt <- 0L > ?? while (TRUE) { > ? ? ?? cnt <- cnt + 1L > ? ? ?? p <- pipe("echo /dev/stdin > /dev/null", open = "w") > ? ? ?? writeLines("foobar", p) >...

I was hoping to fit along the lines of g<-gl(20,5) y<-runif(100) fit<-lme(fixed=y~g,correlation=corAR1(0,~1|g)) But I get the error "Incompatible formulas for groups in "random" and "correlation"" Any help would be greatly appreciated. Ben

Background: I'm a student of Prof. Cleveland at Purdue University. Eventually, we'd like to release a new version of the loess routine in R. For starters, this implementation would have support for local polynomial degree 3, better control over the number of cells in the KD tree, and perhaps a better solution in higher predictor dimension. I see that Prof. Ripley was responsible for

Hi Does rJava offer a way to instruct the JVM to perform a garbage collection? Regards Ben

Full_Name: Ben Tyner Version: 2.2.0 OS: i686-pc-linux-gnu Submission from: (NULL) (128.210.141.240) My appologies if this has already been fixed, but I didn't see it in the tracking system yet so I thought I'd report it. Demonstration: xyplot(Petal.Length ~ Petal.Width | Species, iris, strip = strip.custom(style = 1, var.name = expression(beta),

Full_Name: Benjamin Tyner Version: 2.6.0 RC 2007-10-01 r43043 OS: WinXP Submission from: (NULL) (171.161.224.10) platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status RC major

...n 01/10/2018 12:04 AM, Keith O'Hara wrote: > Check if libopenblas is linked against libomp or libgomp. > > I?d be curious to see any errors that arise when an OpenMP version of OpenBLAS is linked with R. > > Keith > > >> On Jan 9, 2018, at 11:01 PM, Benjamin Tyner <btyner at gmail.com> wrote: >> >> I didn't do the compile; is there a way to check whether that was used? If not, I'll inquire with our sysadmin and report back. >> >> In any case, my suggestion was motivated by the fact that some parts of R use OpenMP while others do no...

...ich must be integral. > > Would hitting everything larger than maxint or maxlonglong with floor > or round fundamentally change the distribution? Well, yes, but enough > that it would matter over process risk? > > Avi > > On Sun, Jan 19, 2020 at 11:20 AM Benjamin Tyner <btyner at gmail.com > <mailto:btyner at gmail.com>> wrote: > > So imagine rpois is changed, such that the storage mode of its return > value is sometimes integer and sometimes numeric. Then imagine the > case > where lambda is itself a realization of a random va...

On Jan 10, 2018 8:24 PM, "Benjamin Tyner" <btyner at gmail.com> wrote: Thanks Keith. We checked, and indeed libopenblas is not linked against libomp nor libgomp. We suspect this is because we used conda to install R and OpenBLAS. So I guess we should be barking up the conda tree instead? What are you barking about? I don't understand wha...

...for Juan?s list: whether OpenBLAS is the right choice to pair with. The library itself hasn?t produced optimized kernels for any of the Intel *Lake chips yet; might be worth considering its near- and long-term future (vs something else). Keith > On Jan 10, 2018, at 8:24 PM, Benjamin Tyner <btyner at gmail.com> wrote: > > Thanks Keith. We checked, and indeed libopenblas is not linked against libomp nor libgomp. We suspect this is because we used conda to install R and OpenBLAS. So I guess we should be barking up the conda tree instead? > > By the way, I also noticed on my ho...