search for: btrask

...naged to get it installed, albeit with some warnings that I didn't understand (it took me a while to find where our mysql libraries were), but when I tried to load it within R I got an error: > library(RMySQL) Error in dyn.load(file, ...) : unable to load shared library '/home/btrask/traskdata/lib/R/ library/RMySQL/libs/RMySQL.so': ld.so.1: R: fatal: relocation error: file /home/btrask/traskdata/ lib/R/library/RMySQL/libs/RMySQL.so: symbol mysql_more_results: referenced symbol not found Error: package/namespace load failed for 'RMySQL' I'm not a sysadmi...

.../traskdata/lib_linux/libcurl.so.3@ /home/jayoung/traskdata/lib_linux/libcurl.so.3.0.0* /home/jayoung/traskdata/lib_linux/libcurl.so.4@ /home/jayoung/traskdata/lib_linux/libcurl.so.4.0.0* /home/jayoung/traskdata/lib_linux/libcurl.so.4.1.1* [11] zork20:/home/jayoung> printenv LD_LIBRARY_PATH /home/btrask/traskdata/lib_linux:/home/jayoung/traskdata/bin_linux/qt/ lib:/home/btrask/traskdata/lib_linux/R/library/RSPerl/libs:/home/ btrask/traskdata/lib_linux/R/lib [14] zork20:/home/jayoung/source_codes/R/other_packages> R CMD INSTALL RCurl_1.3-1.tar.gz --configure-args='--libdir=/home/btrask/t...

...67 6524 email: jayoung ...at... fhcrc.org ------------------------------------------------------------------- ######## on 64-bit node > library(XML) > fileName <- system.file("exampleData", "test.xml", package="XML") > fileName [1] "/home/btrask/traskdata/lib_linux_64/R/library/XML/exampleData/test.xml" > sessionInfo() R version 2.13.0 (2011-04-13) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETA...

...lib:/opt/gcc/lib:/ opt/gcc/lib/gcc/sparc-sun-solaris2.10:/opt/SUNWspro/lib:/usr/lib:/usr/ openwin/lib setenv PATH /opt/gcc/bin:/bin:/sbin:/usr/sbin:/etc:/opt/SUNWspro/bin:/ usr/ccs/bin:/usr/sfw/bin unsetenv R_HOME ./configure --enable-R-shlib R_PAPERSIZE='letter' --prefix='/home/ btrask/traskdata' make ---------------------------- Here's some information on compiler versions, etc, etc ---------------------------- [72] bedrock:/home/jayoung> uname -a SunOS bedrock 5.10 Generic_139555-08 sun4v sparc SUNW,Sun-Fire-T200 [17] bedrock:/home/jayoung> which gcc /opt/gc...

...laris10- sparc-64bit/lib:/opt/SUNWspro/lib:/usr/lib:/usr/openwin/lib setenv PATH /home/jayoung/mysql/mysql-5.0.45-solaris10-sparc-64bit/lib/ bin:/bin:/sbin:/usr/sbin:/etc:/opt/SUNWspro/bin:/usr/ccs/bin unsetenv R_HOME ./configure --enable-R-shlib R_PAPERSIZE='letter' --prefix='/home/ btrask/traskdata' make make install Now, when I do that, configure looks like it completes OK, but during "make" it fails. It also fails if I omit the "--enable-R-shlib" during configure. It fails in a different way if I use my regular environment (i.e. start a new termina...