Displaying 20 results from an estimated 40 matches for "briere".
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fbriere
2011 Mar 27
1
function to compare Brier scores from two models?
Hi,
I have probability estimates from two predictive models. I have these
estimates and also a binary outcome for a validation data set not used in
calibrating either model. I would like to calculate the Brier score for
both models on this binary outcome and test the hypothesis that the Brier
scores are equal from the two models. I have not been able to find an R
function to do this, can
2010 Aug 13
1
val.prob in the Design package - Calibrated Brier Score
Hello,
I am using the val.prob function in the Design package. I understand how
the Brier quadratic error score is calculated, but I do not know how the
Brier score computed on the calibrated rather than raw predicted
probabilities (B cal) is calculated. My question is: how are the calibrated
probabilities calculated? Any explanation of this, or references to
explanations of this, would be
2006 Oct 27
1
Censored Brier Score and Royston/Sauerbrei's D
System: R 2.3.1 on a Windows XP computer.
I am validating several cancer prognostic models that have been
published with a large independent dataset. Some of the models report a
probability of survival at a specified timepoint, usually at 5 and 10
years. Others report only the linear predictor of the Cox model.
I have used Harrell's c index for censored data (rcorr.cens) as a
measure of
2011 Jul 12
0
Brier score for extended Cox model
Dear all,
I would like to obtain the Brier score prediction error at different times t
for an extended Cox model. Previously I have used the 'pec' function
(pec{pec}) to obtain prediction error curves for standard Cox PH models but
now I have data in the counting process format (I have a covariate with a
time-varying effect) and it seems that the pec function does not support the
counting
2005 Jun 29
1
sbrier (Brier score) and coxph
Hello
I've decided to try and distill an earlier rather ill focused question to
try and elicit a response. Any help is greatly appreciated. Why does mod.cox
not work with sbrier whilst mod.km does? Can I make it work?
> data(DLBCL)
> DLBCL.surv<-Surv(DLBCL$time,DLBCL$cens)
>
> mod.km<-survfit(DLBCL.surv)
> mod.cox<-survfit(coxph(DLBCL.surv~IPI, data=DLBCL))
>
2001 Apr 03
4
MS Office with WINE
...ur opinion ?
More precisely, what problems are there in MS Office apps emulation ? Is
there any kind of technical synthesis available on the subject ?
Apart from that, is there any idea of the predictible date for a
professional usable release ?
Thank you in advance for help.
Yours.
Philippe BRIERE
2010 Sep 20
5
predict.lrm ( Design package)
Dear List,
I am familier with binary models, however i am now trying to get predictions from a ordinal model and have a question.
I have a data set made up of 12 categorical predictors, the response variable is classed as 1,2,3,4,5,6, this relates to threat level of the species ( on the IUCN rating).
Previously i have combined levels 1 and 2 to form = non threatened and then combined 3-6 to
2005 Jun 30
1
user authentification error with new samba version
from samba 3.0.9 to 3.0.13
I can not access my shares from a NT4 box as usual
before upgrading.
I can access samba shares from linux via
mount //server/testuser /mnt -o username=testuser,password=testpass
as before.
Even the newest version (3.0.14a) from samba.org doesnt't help.
What has happened to samba ??? Any hints ??
Thanks for your thoughts,
G?tz.
2010 Oct 05
4
Extract summary stats to table
Dear List,
I am looking to run a host of models (60) with three methods - lmer,glm and lrm.
Is there a way to output the key stats into a table that i can copy to excel?
I.e for lmer i would want AIC,BIC etc
for lrm i would want Brier score, r2, c-value etc
At present i am running the models from a script and then copying across the values into a excel spreadsheet however this is time
2010 Oct 06
2
A problem --thank you
dear:teacher
i have a problem which about the polr()(package "MASS"), if the response must have 3 or more levels?
and how to fit the polr() to 2 levels?
thank you.
turly yours
[[alternative HTML version deleted]]
2013 Jul 06
1
problem with BootCV for coxph in pec after feature selection with glmnet (lasso)
Hi,
I am attempting to evaluate the prediction error of a coxph model that was
built after feature selection with glmnet.
In the preprocessing stage I used na.omit (dataset) to remove NAs.
I reconstructed all my factor variables into binary variables with dummies
(using model.matrix)
I then used glmnet lasso to fit a cox model and select the best performing
features.
Then I fit a coxph model
2005 Apr 15
2
negetative AIC values: How to compare models with negative AIC's
Dear,
When fitting the following model
knots <- 5
lrm.NDWI <- lrm(m.arson ~ rcs(NDWI,knots)
I obtain the following result:
Logistic Regression Model
lrm(formula = m.arson ~ rcs(NDWI, knots))
Frequencies of Responses
0 1
666 35
Obs Max Deriv Model L.R. d.f. P C Dxy
Gamma Tau-a R2 Brier
701 5e-07 34.49
2011 Aug 05
1
Goodness of fit of binary logistic model
Dear All,
I have just estimated this model:
-----------------------------------------------------------
Logistic Regression Model
lrm(formula = Y ~ X16, x = T, y = T)
Model Likelihood Discrimination Rank Discrim.
Ratio Test Indexes Indexes
Obs 82 LR chi2 5.58 R2 0.088 C 0.607
0
2006 Oct 02
1
a question regarding 'lrm'
Hi List,
I don't understand why 'lrm' doesn't recognize the '~.' formula. I'm pretty sure it was working before. Please see below:
I'm using R2.3.0, WinXP, Design 2.0-12
thanks,
...Tao
> dat <- data.frame(y=factor(rep(1:2,each=50)), x1=rnorm(100), x2=rnorm(100), x3=rnorm(100))
> lrm(y~., data=dat, x=T, y=T)
Error in terms.formula(formula, specials =
2005 Jun 07
2
Bug#312376: /etc/logcheck/logcheck.ignore is no longer read
Package: logcheck
Version: 1.2.39
Severity: normal
Since I've upgraded my servers to sarge, I'm getting mail every hour for
stuff that was duly included in /etc/logcheck/logcheck.ignore. Turns
out that sarge's version no longer reads that file.
If this was a conscious decision, then there should be some warning
about this when upgrading (via debconf of NEWS.Debian). Also, the
2010 Jun 20
1
"Unable to fit" error message from the lrm function in the rms library
Hi all,
I have another question about the lrm function (from the rms library) that I cannot find the answer to.
I get an error message when I try to fit a model, and I don't know what to make of it. Please forgive me for not having a toy example, but it appears the size and complexity of my data is somehow causing the error. The best I can do is show you what I type and what errors I get.
2009 Aug 21
1
Possible bug with lrm.fit in Design Library
Hi,
I've come across a strange error when using the lrm.fit function and the
subsequent predict function.
The model is created very quickly and can be verified by printing it on
the console. Everything looks good. (In fact, the performance measures
are rather nice.)
Then, I want to use the model to predict some values. I get the
following error: "fit was not created by a Design
2011 May 18
1
logistic regression lrm() output
Hi, I am trying to run a simple logistic regression using lrm() to calculate a
odds ratio. I found a confusing output when I use summary() on the fit object
which gave some OR that is totally different from simply taking
exp(coefficient), see below:
> dat<-read.table("dat.txt",sep='\t',header=T,row.names=NULL)
> d<-datadist(dat)
> options(datadist='d')
2004 Aug 06
6
ices2 routinely abandons one of its streams
...nection, so
the client doesn't appear to be broadcasting. Yet it's not closing the
connection either.
I'm attaching ices2's config file. Any help or pointers would be
appreciated; otherwise I'll have to sprinkle some fprintfs everywhere
and hope for the best. :(
--
Frederic Briere <*> fbriere@fbriere.net
=> <fbriere@abacom.com> IS NO MORE: <http://www.abacomsucks.com> <=
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2010 Dec 09
1
error in lrm( )
Dear Sir or Madam?
I am a doctor of urology,and I am engaged in developing a nomogram of bladder cancer. May I ask for your help on below issue?
I set up a dataset which include 317 cases. I got the Binary Logistic Regression model by SPSS.And then I try to reconstruct the model
?lrm(RECU~Complication+T.Num+T.Grade+Year+TS)? by R-Project,and try to internal validate the model through