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1999 Apr 08
0
Problems installing packages in FreeBSD 2.2.8 and R-0.62.2
....com 2.2.8-RELEASE FreeBSD 2.2.8-RELEASE #0: Thu Dec
10 10:29:07 EST 1998 ath at stiegl.niksun.com:/scratch/obj/compile/STIEGL
i386
==
The CC in use is gcc (not egcs). The install failed as follows:
==
stiegl> R INSTALL pkgs/bootstrap
Installing package `bootstrap' ...
libs
f77 -fpic -c boott.f -o boott.o
boott.f:
ctsub:
xinter:
yinter:
ld: boott.so: No such file or directory
*** Error code 1
Stop.
cp: *.so: No such file or directory
R
data
help
>>> Building help pages for package `bootstrap'
Formats: text html latex
abcnon text...
2014 Apr 24
1
50% performance of custom R build compared to PPA R for a command
...et=ind)
(sum(resid(easy)^2) - sum(resid(diffi)^2))/13 }
tooth.boot <- bootstrap(1:13, 2000, theta)
I'm wondering if this is due to different compiler flags. For R, when
installing the bootstrap package, I see
gcc -std=gnu99 -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o
bootstrap.so boott.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
For R-devel I see:
ccache gcc -shared -L/usr/local/lib -o bootstrap.so boott.o -lgfortran
-lm -lquadmath -L/usr/local/lib/R-devel/lib/R/lib -lR
My install script for the local build is based on Dirk's script [1].
In particular, my configure com...
2004 Sep 21
2
Bootstrap ICC estimate with nested data
...nction(x,DATA){tmod<-lme(CINISMO~1,random=~1|IDGRUP,data=DATA[x,])
OUT<-as.numeric(VarCorr(tmod)[[1]])/(as.numeric(VarCorr(tmod)[[1]])+as.numer
ic(VarCorr(tmod)[[2]]))
return(OUT)}
Finally, I can run the bootstrap-t confidence limit function (or other
functions) as follows:
> bootout<-boott(1:nrow(TDAT),100,theta,data=TDAT)
This seems to work, but the estimates also seem strange. For intance, the
observed ICC value is larger than the 95% confidence intervals provided by
the bootstrap. It occurs to me that the results might be strange because
the sampling with replacement is being d...
2003 Aug 01
0
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