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Everytime I see this in the logs my internet access stops for about 5 minutes. Nothing else follows in the logs. I have DSL. Any ideas? Aug 15 17:14:56 bonsai gconfd (root-6095): starting (version 2.14.0), pid 6095 user 'root' Aug 15 17:14:56 bonsai gconfd (root-6095): Resolved address "xml:readonly:/etc/gconf/gconf.xml.mandatory" to a read-only configuration source at position 0 Aug 15 17:14:56 bonsai gconfd (root-6095): Resolved addre...

...------------------- On Mon, 2/20/17, Martin Maechler <maechler at stat.math.ethz.ch> wrote: Subject: Re: [Rd] another fix for R crashes under enable-strict-barrier, lto, trunk at 72156 To: "Hin-Tak Leung" <htl10 at users.sourceforge.net> Cc: r-devel at r-project.org, "bonsai list" <outmodedbonsai-announce at lists.sourceforge.net> Date: Monday, February 20, 2017, 9:56 AM >>>>> Hin-Tak Leung <htl10 at users.sourceforge.net> >>>>>? ???on Sat, 11 Feb 2017 19:30:26 +0000 writes: ? ? > I haven' t touched R for so...

Dear all, I have a data matrix with 7 independent variables, and each of them is a trinary variable ( - 1, 0 , 1), and I would like to know what kinds of R package or method I should use to perform the clustering. Thanks for any comment or suggestion. -- Lam C. Tsoi (Alex) Medical University of South Carolina [[alternative HTML version deleted]]

Hello All, When I use bw.SJ (based on Sheather & Jones, 1991) in R to estimate the bandwidth for a highly skewed data, I get the following message: "sample is too sparse to find TD". I played around with the parameters such as no. of bins (nb), lower, upper (range over which to minimize) to no avail. My sample size is 50,000. Can anyone tell me what this means and of some

...rsions in the cluster tree, which is inherent to the centroid method. A solution to avoid inversions is to use the Euclidean or the city-block distance, and indeed if you change maximum to euclidean in the above example the inversions are gone.(for reference see chapter 4.1.1 in this link<http://bonsai.hgc.jp/%7Emdehoon/software/cluster/manual/Hierarchical.html>) Now as for my problem, when I use my actual data instead of this example table the inversions are still there when I change to euclidean. The R code is exactly the same as in this example, only the data is different. When I use clust...

Dear R users, Thanks to a new contributor, Luigi Cerulo, amap provides 2 more metrics, and another agglomeration linkage for distance computation, and hierarchical clustering. The new centroid linkage method implemented in the cluster3 software tool (http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm). In this method the pseudoitem of a cluster is computed as the average of the items coordinates, and clusters are aggregated with the same distance metrics used between items. This approach reveals very effective in the context of gene functional expr...

...hings but may be useful to some. -------- Original Message -------- Subject: Mac OS X builds of CelQuantileNorm, vcftools/samtools/tabix, and snpStats Date: Wed, 14 Mar 2012 02:59:42 +0000 (GMT) From: Hin-Tak Leung <htl10 at users.sourceforge.net> Reply-To: htl10 at users.sourceforge.net To: bonsai list <outmodedbonsai-announce at lists.sourceforge.net> CelQantileNorm, vcftools/samtools/tabix are bult for Mac OS X. These are universal binaries and work for all recent variants of Powerpc-, Intel 32-bit/64-bit Macs. snpStats 1.5.5 (out a week ago) turned out to be "differently bu...