Displaying 17 results from an estimated 17 matches for "biotools".
2017 Oct 29
3
Renjin?
...the "back to the drawing board" department, I found what looks like a much better solution to using R in Java. Renjin.
Looking at the docs and then trying a quick example, didn't quite work.
Of course I'm missing something.
Although I'm telling the engine to require ("biotools") just like I would in R itself, when I get to the line of code that does the actual call
engine.eval("boxMResult <- boxM(inputIris [,-5], inputIris[,5])");
Then, I get:
Exception in thread "main" org.renjin.eval.EvalException: could not find function 'boxM'...
2017 Oct 29
0
Renjin?
...ooks
> > like a much better solution to using R in Java. Renjin.
> >
> > Looking at the docs and then trying a quick example, didn't quite
> > work.
> >
> > Of course I'm missing something.
> > Although I'm telling the engine to require ("biotools") just like I
> > would in R itself, when I get to the line of code that does the
> > actual call
> >
> > engine.eval("boxMResult <- boxM(inputIris [,-5], inputIris[,5])");
> > Then, I get:
> > Exception in thread "main" org.renjin.ev...
2010 Aug 30
1
search path for attaching packages
...methods
LazyLoad: yes
License: LGPL (version 2 or later)
Collate: DBI.R Util.R zzz.R
Packaged: Tue Oct 16 21:43:31 2007; dj
Built: R 2.10.0; ; 2009-10-26 17:51:14 UTC; unix
Further information is available in the following vignettes in
directory
'/usr/local/biotools/r/R-2.10.0/lib64/R/library/DBI/doc':
> version
_
platform x86_64-unknown-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status...
2017 Oct 28
2
Cannot Compute Box's M (Three Days Trying...)
...ariable)"; // your suggestion.
RESULTING ERROR:
Error in format.default(nam.ob, width = max(ncn), justify = "left") : invalid 'width' argument
(No idea what this means).
For testing, I'm using the same standard IRIS dataset as the Box's M documentation shows in biotools:
Examples
data(iris)
boxM(iris[, -5], iris[, 5])
-------
Now, in the debugger, the built values of myDf are these:
myDf = {org.rosuda.REngine.REXPGenericVector at 562} "org.rosuda.REngine.REXPGenericVector at 17d99928+[5]?
? payload = {org.rosuda.REngine.RList at 566} size = 5
? 0 = {o...
2017 Oct 27
4
Cannot Compute Box's M (Three Days Trying...)
...Box's M right there in RStudio
But I don't see what is wrong below with the coding equivalent.
The entire code snippet is below. The code fails below on the call to the boxM statistic call.
PLEASE HELP!!!
Thanks in advance,
-------------------------
rConnection.eval("library('biotools')");
String inputIris = "5.1,3.5,1.4,0.2,setosa\n" +
"4.9,3,1.4,0.2,setosa\n" +
"4.7,3.2,1.3,0.2,setosa\n" +
"4.6,3.1,1.5,0.2,setosa\n" +
"5,3.6,1.4,0.2,setosa\n" +
"5.4,3.9,1.7,0.4,setosa\n" +
"4.6,3.4,1.4,0.3,setosa\n"...
2017 Oct 28
2
Cannot Compute Box's M (Three Days Trying...)
...ding equivalent.
>> The entire code snippet is below. The code fails below on the call to the boxM statistic call.
>> PLEASE HELP!!!
>> Thanks in advance,
>> ---------------------------------------------------------------
>>
>> rConnection.eval("library('biotools')");
>> String inputIris = "5.1,3.5,1.4,0.2,setosa\n" +
>> "4.9,3,1.4,0.2,setosa\n" +
>> "4.7,3.2,1.3,0.2,setosa\n" +
>> "4.6,3.1,1.5,0.2,setosa\n" +
>> "5,3.6,1.4,0.2,setosa\n" +
>> "5.4,3.9,1.7,0.4...
2017 Oct 28
2
Cannot Compute Box's M (Three Days Trying...)
...- print(typeof(boxMVariable[[i]]))
> [1] "double"
> [1] "double"
> [1] "double"
> [1] "double"
> [1] "integer"
>
>> For testing, I'm using the same standard IRIS dataset as the Box's M
>> documentation shows in biotools:
>> Examples
>> data(iris)
>> boxM(iris[, -5], iris[, 5])
>> -------
>> **
>> Now, in the debugger, the built values of myDf are these:
>> myDf = {org.rosuda.REngine.REXPGenericVector at 562}
>> "org.rosuda.REngine.REXPGenericVector at 17d99928+[...
2017 Oct 28
0
Cannot Compute Box's M (Three Days Trying...)
...t"
> for (i in 1:5)
+ print(typeof(boxMVariable[[i]]))
[1] "double"
[1] "double"
[1] "double"
[1] "double"
[1] "integer"
>
> For testing, I'm using the same standard IRIS dataset as the Box's M
> documentation shows in biotools:
>
> Examples
>
> data(iris)
> *boxM(iris[, -5], iris[, 5])*
>
> *-------*
> **
> Now, in the debugger, the built values of myDf are these:
>
> *myDf* = {org.rosuda.REngine.REXPGenericVector at 562}
> "org.rosuda.REngine.*REXPGenericVector*@17d99928+[5]...
2017 Oct 28
0
Cannot Compute Box's M (Three Days Trying...)
..."double"
>> [1] "double"
>> [1] "double"
>> [1] "double"
>> [1] "integer"
>>
>> For testing, I'm using the same standard IRIS dataset as the Box's M
>> documentation shows in biotools:
>> Examples
>> data(iris)
>> /boxM(iris[, -5], iris[, 5])/
>> /-------/
>> **
>> Now, in the debugger, the built values of myDf are these:
>> /myDf/ = {org.rosuda.REngine.REXPGenericVector at 562}
>> "org.rosuda.R...
2017 Oct 29
2
Cannot Compute Box's M (Three Days Trying...)
...;> [1] "double"
>>> [1] "double"
>>> [1] "double"
>>> [1] "double"
>>> [1] "integer"
>>> For testing, I'm using the same standard IRIS dataset as the Box's M
>>> documentation shows in biotools:
>>> Examples
>>> data(iris)
>>> /boxM(iris[, -5], iris[, 5])/
>>> /-------/
>>> **
>>> Now, in the debugger, the built values of myDf are these:
>>> /myDf/ = {org.rosuda.REngine.REXPGenericVector at 562}
>>> "org.rosuda.R...
2017 Oct 27
0
Cannot Compute Box's M (Three Days Trying...)
...t see what is wrong below with the coding equivalent.
>
> The entire code snippet is below. The code fails below on the call to the boxM statistic call.
>
> PLEASE HELP!!!
>
> Thanks in advance,
>
> -------------------------
>
> rConnection.eval("library('biotools')");
>
> String inputIris = "5.1,3.5,1.4,0.2,setosa\n" +
> "4.9,3,1.4,0.2,setosa\n" +
> "4.7,3.2,1.3,0.2,setosa\n" +
> "4.6,3.1,1.5,0.2,setosa\n" +
> "5,3.6,1.4,0.2,setosa\n" +
> "5.4,3.9,1.7,0.4,setosa\n" +...
2017 Oct 29
0
Cannot Compute Box's M (Three Days Trying...)
...ot;
>> [1] "double"
>> [1] "double"
>> [1] "integer"
>> For testing, I'm using the same standard IRIS dataset as
>> the Box's M
>> documentation shows in biotools:
>> Examples
>> data(iris)
>> /boxM(iris[, -5], iris[, 5])/
>> /-------/
>> **
>> Now, in the debugger, the built values of myDf are these:
>> /myDf/ = {org.rosuda.REngine.R...
2017 Oct 27
0
Cannot Compute Box's M (Three Days Trying...)
...t see what is wrong below with the coding equivalent.
>
> The entire code snippet is below. The code fails below on the call to the
> boxM statistic call.
>
> PLEASE HELP!!!
>
> Thanks in advance,
>
> -------------------------
>
> rConnection.eval("library('biotools')");
>
> String inputIris = "5.1,3.5,1.4,0.2,setosa\n" +
> "4.9,3,1.4,0.2,setosa\n" +
> "4.7,3.2,1.3,0.2,setosa\n" +
> "4.6,3.1,1.5,0.2,setosa\n" +
> "5,3.6,1.4,0.2,setosa\n" +
> "5.4,3.9,1.7,0.4,setosa\n" +
&...
2017 Oct 24
0
Creating a data table (frame?) from a SQL Statement?
...Please excuse my brevity.
On October 24, 2017 10:11:28 AM PDT, Morkus <morkus at protonmail.com> wrote:
>Jeff,
>
>Excellent points, thank you!
>
>Yes, I have all the required packages installed.
>
>Below's the actual full script.
>
>require(Rserve)
>require(biotools)
>library(rJava)
>library(RJDBC)
>drv <- JDBC("com.mysql.jdbc.Driver","/Users/.../mysql.jar")
>conn <- dbConnect(drv, "jdbc:mysql://localhost:3306/morkus","root",
>"password")
>dbListTables(conn)...
2017 Oct 28
0
Cannot Compute Box's M (Three Days Trying...)
...ode snippet is below. The code fails below on the call
>> to the boxM statistic call.
>> PLEASE HELP!!!
>> Thanks in advance,
>> ------------------------------------------------------------------------
>>
>> rConnection.eval("library('biotools')");
>> String inputIris = "5.1,3.5,1.4,0.2,setosa\n" +
>> "4.9,3,1.4,0.2,setosa\n" +
>> "4.7,3.2,1.3,0.2,setosa\n" +
>> "4.6,3.1,1.5,0.2,setosa\n" +
>> "5,3.6,1.4,0.2,setosa\n" +
>>...
2017 Oct 26
1
How to create a table structure in Java code?
Thanks! I just figured it out (thanks to "Beyond Compare") and was coming here to post back.
The boxM test doesn't work with that (now, finally working) REXP structure, but I probably now need to create a table or something and parse that structure.
So much fun! :)
Thanks again.
- M
Sent from [ProtonMail](https://protonmail.com), Swiss-based encrypted email.
> --------
2006 Aug 24
2
Problem in library.dynam problems on Linux
We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system