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I reported bugs in "rhyper" and the TASKS.OLD file claims that they have been fixed. But R continues to get stuck (the prompt never comes back) if I use rhyper with N1, N2, n large, for example "rhyper(5,200,250,60)". E. S. Venkatraman (venkat at biosta.mskcc.org) =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-reques...

...-none- numeric intercept 1 -none- logical qr 6 -none- list > ls.print(lsfit(hyeung[,1],hyeung[,2])) trace: ls.print(lsfit(hyeung[, 1], hyeung[, 2])) Error: missing value in ``n1 : n2'' ------------------------------------------------- E. S. Venkatraman (venkat at biosta.mskcc.org) =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-reques...

...-none- numeric intercept 1 -none- logical qr 6 -none- list > ls.print(lsfit(hyeung[,1],hyeung[,2])) trace: ls.print(lsfit(hyeung[, 1], hyeung[, 2])) Error: missing value in ``n1 : n2'' ------------------------------------------------- E. S. Venkatraman (venkat at biosta.mskcc.org) =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-reques...

...l Sloan-Kettering Cancer Center ----------------------------------------------------------------------- ---1062723383-1338110495-951864474=:10358 Content-Type: TEXT/PLAIN; charset=US-ASCII; name="r1.out" Content-Transfer-Encoding: BASE64 Content-ID: <Pine.OSF.4.05.10002291747540.10358@biosta.mskcc.org> Content-Description: Output from R. Content-Disposition: attachment; filename="r1.out" W3ZlbmthdEBtc2stMTMwLTE1MyB2ZW5rYXRdJCBSDQogDQpSIDogQ29weXJp Z2h0IDIwMDAsIFRoZSBSIERldmVsb3BtZW50IENvcmUgVGVhbQ0KVmVyc2lv biAxLjAuMCAgKEZlYnJ1YXJ5IDI5LCAyMDAwKQ0KIA0KUiBpcyBmcmVlIHNv ZnR3...

Is this a feature/bug or am I missing something: R : Copyright 1999, The R Development Core Team Version 0.63.2 (January 12, 1999) ...... > ls() character(0) > x <- NULL > x$x1 <- rnorm(10) > x$x2 <- rnorm(10) > mode(x) [1] "pairlist" > as.data.frame(x) Error: can't coerce pairlist into a

A cut and paste typo has crept in and is rendering all values returned for the hypergeometric distribution incorrect. The problem is in src/main/arithmetic.c in the function "math4". The lines PROTECT(sy = allocVector(REALSXP, n)); a = REAL(sa); b = REAL(sb); c = REAL(sc); d = REAL(sc); /* <-- change this line */ y = REAL(sy); should

> Ennapadam Venkatraman <venkat@biosta.mskcc.org> writes: >> > x <- NULL >> > x$x1 <- rnorm(10) >> > x$x2 <- rnorm(10) >> > mode(x) >> [1] "pairlist" >> > as.data.frame(x) >> Error: can't coerce pairlist into a data.frame Fix...

The newest version of R for Unix (version 0.50 alpha-1) is now (or will soon be) available from the following sites. NORTH AMERICA: http://lib.stat.cmu.edu/R/Alpha EUROPE: ftp://ftp.stat.math.ethz.ch/R/ ftp://statlab.uni-heidelberg.de/pub/mirrors/auckland/R/ JAPAN: ftp://ftp.u-aizu.ac.jp/pub/lang/R/ NEW ZEALAND: ftp://stat.auckland.ac.nz/pub/R/

...ficult to verify because they pertain to specific hardware or operating system versions. If you have information to contribute, please do so. If you happen to know how to fix a problem please send patches to the bug repository, too. New bugs are reported either through the web interface at r-bugs.biostat.ku.dk or via email to r-bugs@biostat.ku.dk. The bug.report() function can be used to automate parts of the procedure on many systems. Followups on older bugs can be done by including the string "(PR#999)" in the Subject of an email (change 999 to the actual reference number, of course!)....

...rks better. Additional functionality will be added. o "sample" now has an optional "prob" argument which gives the probabilities of sampling each element in the vector being sampled. The present implementation is based on some code from E. S. Venkatraman <venkat at biosta.mskcc.org>. o The internal data structure used to represent lists has changed from being based on dotted pairs to generic vectors. Users should see no changes as a result (with the exception of some efficiency gains in list operations). o Subscripting matches that of S more closely....

...rks better. Additional functionality will be added. o "sample" now has an optional "prob" argument which gives the probabilities of sampling each element in the vector being sampled. The present implementation is based on some code from E. S. Venkatraman <venkat at biosta.mskcc.org>. o The internal data structure used to represent lists has changed from being based on dotted pairs to generic vectors. Users should see no changes as a result (with the exception of some efficiency gains in list operations). o Subscripting matches that of S more closely....

...ficult to verify because they pertain to specific hardware or operating system versions. If you have information to contribute, please do so. If you happen to know how to fix a problem please send patches to the bug repository, too. New bugs are reported either through the web interface at r-bugs.biostat.ku.dk or via email to r-bugs@biostat.ku.dk. The bug.report() function can be used to automate parts of the procedure on many systems. Followups on older bugs can be done by including the string "(PR#999)" in the Subject of an email (change 999 to the actual reference number, of course!)....

...ficult to verify because they pertain to specific hardware or operating system versions. If you have information to contribute, please do so. If you happen to know how to fix a problem please send patches to the bug repository, too. New bugs are reported either through the web interface at r-bugs.biostat.ku.dk or via email to r-bugs@biostat.ku.dk. The bug.report() function can be used to automate parts of the procedure on many systems. Followups on older bugs can be done by including the string "(PR#999)" in the Subject of an email (change 999 to the actual reference number, of course!)....

...ficult to verify because they pertain to specific hardware or operating system versions. If you have information to contribute, please do so. If you happen to know how to fix a problem please send patches to the bug repository, too. New bugs are reported either through the web interface at r-bugs.biostat.ku.dk or via email to r-bugs@biostat.ku.dk. The bug.report() function can be used to automate parts of the procedure on many systems. Followups on older bugs can be done by including the string "(PR#999)" in the Subject of an email (change 999 to the actual reference number, of course!)....

I installed the latest version of R (Version 0.50 Alpha-4) and it breaks survival4 as follows (it worked fine under Version 0.50 Alpha-3) R> library(survival4) Autoloading required library: splines R> survfit(Surv(runif(25),rbinom(25,1,0.4)) ~ 1) Error in eval(frame, data)[subset, , drop = FALSE] : incorrect number of dimensions Thanks E. S. Venkatraman

I have a function that generates data and tries to apply the survfit within it. I have tried: function(..){ x ..... survfit(Surv(tim,sts) ~ grp, data = x, envir = sys.frame(sys.parent())) } but I still get "Error: Object "x" not found". Is there a fix? (I use R-0.63.2 with the current survival4 package) Thanks E. S. Venkatraman

I installed R 0.64.2 using "rwinst.exe" on a Windows 95 machine. The zip files and rwinst.exe were stored in a directory "rtmp" and I wanted R to be installed in "r0642" (by setting c:\rtmp for source directory and c:\ for install directory). After the installation was completed the main program was in r0642 whereas all the documentation in c:\rtmp\r0642. Is this

I am trying to compile R on my Debian 2.0 machine. I have both gcc and egcc (required for g77). Since the configure script doesn't check for egcc I used CC=egcc (even used LDCMD=egcc) in the config.site file. Everything worked fine until the final binary where it tries to use gcc ....... egcc -g -I../include -c unique.c egcc -g -I../include -c util.c egcc -g -I../include -c

I am trying to use the function "nlm" to find the mle. I want to use a generic function for the likelihood which would require me to use both the parameters and the data as arguments. But nlm requires the function to have only the parameters as arguments for this function (see example below). > testfun <- function(x,y) sum((x-y)^2) # x - parameters, y - data >

The new code seems to have broken various things. Autoloading of libraries doesn't seem to work: > library(survival4) Autoloading required library: splines Error in pos.to.env(pos) : invalid "pos" argument > search() [1] ".GlobalEnv" "library:survival4" "library:date" [4] "library:base" The coxph function the