search for: bioinformatik

...nything in the manual page that explains this behaviour or says how to change it. So I'm asking the community: Is there a way to fix this or do I have to code around it? This is in R 2.11.1 (Linux), by the way. Thanks in advance Philipp -- Dr. Philipp Pagel Lehrstuhl f?r Genomorientierte Bioinformatik Technische Universit?t M?nchen Wissenschaftszentrum Weihenstephan Maximus-von-Imhof-Forum 3 85354 Freising, Germany http://webclu.bio.wzw.tum.de/~pagel/

...3164 0.05646411 1.32961329 [2,] -0.5118627 0.77715344 0.01146612 [3,] -3.1209441 -1.20990127 0.17358793 [4,] -1.6722699 -1.01932191 -0.57786899 [5,] 0.6710289 1.08218836 0.76736702 Can anyone think of a more efficient way? cu Philipp -- Dr. Philipp Pagel Lehrstuhl f?r Genomorientierte Bioinformatik Technische Universit?t M?nchen Wissenschaftszentrum Weihenstephan 85350 Freising, Germany http://mips.gsf.de/staff/pagel

Dear All: I do see I have weeks of codes in my console when I check with my arrow up keys. I have been clearing them with Control L but it seems to clear it clear the screen temporally. I do see the previous codes again when I open R the next day, after quitting the session! Q: How do I clear this? Thanks; YA -- View this message in context:

...can be explained ? Regards Klaus-P. -- Dr. Klaus-Peter Pleissner Max Planck Institute for Infection Biology Core Facility Bioinformatics Campus Charit? Mitte Schumannstr. 21/22 D-10117 Berlin Germany *Phone:* +49-30-28460-119 *Fax:* +49-30-28460-507 *URL:* http://web.mpiib-berlin.mpg.de/bioinformatik <http://web.mpiib-berlin.mpg.de/bioinformatik/> *Email:* pleissner at mpiib-berlin.mpg.de <mailto:pleissner at mpiib-berlin.mpg.de>

Dear R-helpers I would like to do a fit of the form: y = a (x+c)**b, where a, b and c are unknown. Does anybody know how to do it? Thanks Thomas

All, I think this is pretty basic but I couldn't find the answer in any source. I have just built my own R for Linux (amd 64). It runs well, but R thinks that it only has 80 characters or so of screen width. I log on with Putty to the box and can stretch it as large as I want. Is there a simple way to tell R to use more screen width when displaying? From whatami: OS RELEASE :

Hi, * I am using read.table command as follow kegg<-read.table("c:/IDs.tab",header =TRUE,quote= "'", sep="\t") * Fragment of file is as follow: ID Pathway 04916 Melanogenesis 04920 Adipocytokine signaling pathway 04930 Type II diabetes mellitus 04940 Type I diabetes mellitus 04950 Maturity onset diabetes of the young 05010

Hi, How can I overlap two density plots? A <- c(8,10,10,11,11,11,12,12,12,12,11,11,11,10,10,7) B <- c(11,13,13,14,14,14,15,15,15,15,14,14,14,13,13,10) plot(density(A)) plot(density(B)) Regards, Emre P.S. There's a overlap.density function in package DAAG Is there another way to do this? -- --- Emre ÜNAL http://www.geocities.com/dusemre [[alternative HTML version

Greetings helpRs -- I would like to use plot() to plot two cumulative distribution curves so that a user of the plot can compare the distributions of the two variables. The following code draws two distributions separately, but I cannot find the instruction necessary to add a second cumulative distribution to the first one. Any suggestion would be very welcome. x1 <-

Dear list, Can somebody tell me how to invoke user-defined functions from script files during run-time? Basically I have (almost) one function per script file. I am thinking of something like #include in C++ import in Java/Python use in Perl No, I don't need my functions every time R is started. Neither I am thinking about writing building my functions into packages. I just

Hi, I was wondering whether there was an easy way to change the attributes of all elements in a data.frame (rather than looping through elements)? Specifically, I would like to set the "dim" attributes to NULL Thanks for any help, Jarrod -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.

Hello, I have difficulties in reading in a text file with multiple (=2) header lines. My table looks like this: id code gr grcode AA AB AC AD time 30 40 50 60 1 1234 1 c 0 1 0 0 2 1346 1 c 0 0 0 1 3 1456 1 c 0 0 1 1 4 1893 1 c 0 0 1 1 Can someone help me out? Thanks Deborah --

...l discover the correct DC to contact automatically). but still winbindd is not detected. The process spawned by the systemctl service is 25130 /usr/sbin/winbindd --foreground --no-process-group cu, Frank -- Dipl.-Inform. Frank Steiner Web: http://www.bio.ifi.lmu.de/~steiner/ Lehrstuhl f. Bioinformatik Mail: http://www.bio.ifi.lmu.de/~steiner/m/ LMU, Amalienstr. 17 Phone: +49 89 2180-4049 80333 Muenchen, Germany Fax: +49 89 2180-99-4049 * Rekursion kann man erst verstehen, wenn man Rekursion verstanden hat. *

Hi list, I have a question on how to identify the overlapped items from two vectors: >x<-c(0,1,2) >y<-c(1,2,2,3) and plot the number of the overlapped as well as non-overlapped in a diagram? Thanks much, Allen [[alternative HTML version deleted]]

Dear R Community, A simple problem (for some of you): I wish to index a data.frame by all elements NOT in my index E.g.: > a<-as.data.frame(matrix(rnorm(100),nrow=10,ncol=10)) > b<-which(a$V1>0.8) > b [1] 1 4 6 10 > a_indexb<-a[b,] > a_notIndexB<-a[!b,] > nrow(a_notIndexB) [1] 0 Indexing a on b is not a problem (a_indexb), but how can do get only the

Hi all, I have a large data.frame, 1530 observation with 6 columns. I want to merge a 7th column, a transformation of the response variable (hospital admissions), namely trans<-sqrt(copd$admissions+0.25) trans<-data.frame(trans) And now when I do copd2<-merge(copd,trans) (copd being my original data.frame), R either crashes or is taking an extremely long time to do the computation. I

Hi all, I have a data management question. I am using an panel dataset read into R as a dataframe, call it "ex". The variables in "ex" are: id year x id: a character string which identifies the unit year: identifies the time period x: the variable of interest (which might contain NAs). Here is an example: > id <- rep(c("A","B","C"),2)

..../source3/libsmb/namequery.c:78(saf_store) Nov 28 23:25:20 server2 winbindd[30975]: saf_store: refusing to store 0 length domain or servername! I've no idea why smbd doesn't see it :-( cu, Frank -- Dipl.-Inform. Frank Steiner Web: http://www.bio.ifi.lmu.de/~steiner/ Lehrstuhl f. Bioinformatik Mail: http://www.bio.ifi.lmu.de/~steiner/m/ LMU, Amalienstr. 17 Phone: +49 89 2180-4049 80333 Muenchen, Germany Fax: +49 89 2180-99-4049 * Rekursion kann man erst verstehen, wenn man Rekursion verstanden hat. * -- Dipl.-Inform. Frank Steiner Web: http://www.bio.ifi.lmu.de/...

Dear I try to add three different lines (solid, short dash, long dash) in to current barplot. I saw there are types of lines ("p","b", ect). However, they are not what I request. Has nayone have this experience? Many Thanks! Xin [[alternative HTML version deleted]]

...11 0.2222222 0.1388889 0.0000000 0.8611111 So there are two numbers more than equals to values[1,2] So > values.new[1,2]= 2/length(values[1,]) With best regard, Suparna ---------------------------- Ms Suparna Mitra Eberhard-Karls-Universität Tübingen Wilhelm-Schickard-Institut Algorithmen der Bioinformatik Sand 14, 72076 Tuebingen Germany Tel. ++49-7071-29 70453 (0) Fax ++49-7071-29 5148 (0) Phone: ++49-176-20361469 (M) ++49-7071-1477169 (R) Alternative e-mail: mitra@informatik.uni-tuebingen.de [[alternative HTML version deleted]]