search for: bioinfo

...quot;smbmount"ed directories. I had no problem joining this domain, and the user that I am connecting as has permissions to open these folders (I checked from another machine). Testparm yields no problems, and I can l Here is an except of the error (NT_STATUS_PATH_NOT_COVERED) in context: [bioinfo@array30 bioinfo]$ smbclient -d1 -A ~/.smbcred -I 129.85.1.211 "//rockefeller.edu/genearray" [2003/11/20 05:45:41, 1] client/client.c:do_connect(2598) Domain=[ROCKEFELLERNT] OS=[Windows Server 2003 3790] Server=[Windows Server 2003 3790] smb: \> cd "Test Lab" smb: \Test Lab\...

Hi all, I'm new to Centos, just moved here from Gentoo Linux. I have to install a server for bioinformatics purposes and I see that default yum repositories do not include any bioinformatics software (i.e. ncbi-toolkit, blat, and others). I'm googling a bit but I can't find a valuable solution: which is (or which are) the best repository I should add to have a satisfying list of bi...

...g Oracle 8i.1.7.0.0 (enterprise edition) and when I try to load ROracle I receive the following error: "require(ROracle) Loading required package: ROracle Loading required package: DBI Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/bioinfo/local/R/lib/R/library/ROracle/libs/ROracle.so": ld.so.1: /bioinfo/local/R/lib/R/bin/exec/R: fatal: relocation error: file /bioinfo/local/R/lib/R/library/ROracle/libs/ROracle.so: symbol ncrov: referenced symbol not found [1] FALSE" Any help is appreciated Regards, Sabrina Sabrina Ca...

...ing problems to set text labels in a scatter plot. At some areas dots are close and labels overlap and texts cannot be read. I have too many dots to adjust this manually. Is there any function that will calculate the label offsets to avoid this overlapping problem? Thanks Ana -- Ana Conesa Bioinformatics and Genomics Department Centro de Investigaciones Principe Felipe Avda. Autopista Saler 16, 46012 Valencia, Spain Phone: +34 96 328 96 80 Fax: +34 96 328 97 01 http://bioinfo.cipf.es/aconesa http://www.blast2go.org ========================================== FIRST INTERNATIONAL COURSE IN AU...

Running the example in the documentation causes R to crash. dario at bioinfo:~$ R R version 3.0.3 (2014-03-06) -- "Warm Puppy" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license...

...ns the "smb.conf", although if anyone suspects that there are configuration problems then I will gladly follow up with that information. A quick capture of the smbclient problem is below. This is a self compiled version, and I removed the previously installed binary (so no conflicts). [bioinfo@array30 bioinfo]$ smbclient -d1 -A ~/.smbcred -I 129.85.1.211 "//rockefeller.edu/genearray" [2003/11/20 05:45:41, 1] client/client.c:do_connect(2598) Domain=[ROCKEFELLERNT] OS=[Windows Server 2003 3790] Server=[Windows Server 2003 3790] smb: \> cd "Test Lab" smb: \Test Lab\...

...x64 ERROR: compilation failed for package 'spp' * removing 'C:/Program Files/R/R-2.13.0/library/spp' Mensagens de aviso perdidas: 1: execu??o do comando 'C:/PROGRA~1/R/R-213~1.0/bin/x64/R CMD INSTALL -l "C:/Program Files/R/R-2.13.0/library" "D:/Felipe/doutorado/bioinfo/spp_1.10.tar.gz"' teve status 1 2: In install.packages(filename, type = "source", repos = NULL) : installation of package 'D:/Felipe/doutorado/bioinfo/spp_1.10.tar.gz' had non-zero exit status -- View this message in context: http://r.789695.n4.nabble.com/Installi...

Hi, Dear all, i encounted a problem with tcl/tk installation actually i want to install q-value package i use the R CMD INSTALL command: [root@bioinfo ~]# R CMD INSTALL qvalue_1.20.0.tar.gz * Installing to library �usr/local/lib64/R/library� * Installing *source* package ‘qvalue�... ** R ** data ** inst ** preparing package for lazy loading Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system Error...

...20 status Under development (unstable) major 2 =20 minor 0.0 =20 year 2004 =20 month 04 =20 day 30 =20 language R =20 =2D-=20 Ram=F3n D=EDaz-Uriarte Bioinformatics Unit Centro Nacional de Investigaciones Oncol=F3gicas (CNIO) (Spanish National Cancer Center) Melchor Fern=E1ndez Almagro, 3 28029 Madrid (Spain) =46ax: +-34-91-224-6972 Phone: +-34-91-224-6900 http://bioinfo.cnio.es/~rdiaz PGP KeyID: 0xE89B3462 (http://bioinfo.cnio.es/~rdiaz/0xE89B3462.asc...

...n of Agresti's "Categorical Data Analysis" (my old copy of the first ed. of that wonderful book is falling apart). I would appreciate suggestions about other comparable books which, if possible, have examples using R/S code (instead of SAS). Thanks, Ram?n -- Ram?n D?az-Uriarte Bioinformatics Unit Centro Nacional de Investigaciones Oncol?gicas (CNIO) (Spanish National Cancer Center) Melchor Fern?ndez Almagro, 3 28029 Madrid (Spain) http://bioinfo.cnio.es/~rdiaz

Ich habe in R eine Version von SIR gefunden und ausprobiert. Leider kann diese multivariate Responses nicht verarbeiten. Gibt es in R eine ausgefeilte Version von SIR?

...of boot and Design are using stratified resampling indicates to me that this might be the obvious, unproblematic way to go, but I understood that stratified resampling was OK only when that was sampling scheme that generated the data. What am I missing? Thanks, R. -- Ram??n D??az-Uriarte Bioinformatics Unit Centro Nacional de Investigaciones Oncol??gicas (CNIO) (Spanish National Cancer Center) Melchor Fern??ndez Almagro, 3 28029 Madrid (Spain) Fax: +-34-91-224-6972 Phone: +-34-91-224-6900 http://bioinfo.cnio.es/~rdiaz PGP KeyID: 0xE89B3462 (http://bioinfo.cnio.es/~rdiaz/0xE89B3462.asc)

...Ytrain)) > Xhat <- mypls$training$Xscores %*% t(mypls$training$Xload) > R2 <- 1-(sum((Xhat-Xtrain)^2)/sum(Xtrain^2)) > Q2 <- 1-(sum((Ytrain-mypls$validat$Ypred[,,1])^2)/sum(Ytrain^2) Is this right? Thank you Ana ------------------------------------------- Ana Conesa, PhD Bioinformatics Department Centro de Investigaci?n Pr?ncipe Felipe Avda. Autopista Saler 16 46013 Valencia Spain http://bioinfo.cipf.es =========================================== CAMDA2007 Conference @ CIPF http://camda.bioinfo.cipf.es

...is the parameter estimates. Is there any function to do this in R? Cheers, Philippe -- Philippe Hup? Institut Curie, CNRS UMR 144, INSERM U900 26 rue d'Ulm 75005 Paris - France Email : Philippe.Hupe at curie.fr T?l : +33 (0)1 56 24 69 91 Fax: +33 (0)1 56 24 69 11 website : http://bioinfo.curie.fr

...y 22 de Septiembre de 2011. El curso está abierto a toda persona interesada, sin necesidad de conocimientos de estadística o programación previos. En el siguiente enlace se puede encontrar más información sobre el temario, así como también del proceso de inscripción y forma de pago: http://bioinfo.iconcologia.net/curso_r_2011/ Puesto que el número máximo de inscripciones es de 25 personas, y teniendo en cuenta la lista de espera que ha habido en ediciones anteriores, se recomienda realizar la reserva del curso cuanto antes enviando un correo electrónico a Olga López (olopez@iconcologia.n...

How would i allow xwindows and xdmcp through would it be ACCEPT net -> fw all 117 and ACCEPT net -> fw all 6000:6100 ? and for that matter how would i stop x traffic from leaving the fw machine? REJECT fw -> net all 6000:6100 ?

...dence intervals Anyone knows how to do it? (xYplot did not work either) many thanks - juan -- Juan F. Poyatos Structural and Computational Biology Programme Spanish National Cancer Centre (CNIO) Melchor Fernandez Almagro, 3/E-28029 Madrid SPAIN Phone:+34 912 246 900/Fax: +34 912 246 980 http://bioinfo.cnio.es/~jpoyatos/ **NOTA DE CONFIDENCIALIDAD** Este correo electr?nico, y en s...{{dropped}}

To avoid angry replies, let me first say that I know that the use of Type III sums of squares is controversial, and that some statisticians recommend instead that significance be judged using the non-marginal terms in the ANOVA. However, given that type III SS is also demanded by some… is there a function (equivalent to drop1 for lm) to obtain type III sums of squares for mixed models using the

...1] "open" [1] "update" [1] "update" [1] "close" [1] "close" Error in getClass(Class, where = topenv(parent.frame())) : "MIAME" is not a defined class Execution halted /bioinfo/apps/lib/R/bin/INSTALL: line 1: 761 Broken pipe cat "/home/sxv6413/rstuffs/lib/affy/R/affy" ERROR: execution of package source for 'affy' failed ** Removing '/home/sxv6413/rstuffs/lib/affy' I have also installed Biobase using the same comman...

To anyone who can help, I have two stupid questions, and one fairly intelligent question Stupid question (1): is there an R function to calculate a factorial of a number? That is...is there a function g(.) such that g(3) = 6, g(4) = 24, g(6) = 720, etc? Stupid question (2): how do you extract the estimated covariance matrix of the random effects in an lme object? Intelligent question