Displaying 3 results from an estimated 3 matches for "biodist".
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bindist
2010 Dec 21
0
Where is the bioDist package?
venik wrote:
>
> I am trying in vain to find the bioDist package.
> More generally, where can I find a lit of packages and their location? I
> thought CRAN will have it, but I had no luck with bioDist.
>
Google bioDist, second hit (maybe another one, depending on your language
settings).
D
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2007 Jul 19
1
RAM, swap, Error: cannot allocate vector of size, Linux:
...9;unlimited'.
Here is the problem:
I have uploaded and normalized 48 ATH1 microarray slides using the justRMA function.
>library("affy")
>setwd("/Data/cel")
>Data<-justRMA()
The next step in my analysis is to calculate a distance matrix for my dataset using bioDist package. This is where I get my error.
>library("bioDist")
>x<-cor.dist(exprs(Data))
Error: cannot allocate vector of size 3.9 Gb
I used the following function to examine my memory limitations:
> mem.limits()
nsize vsize
NA NA
I believe this means there isn't any...
2007 Oct 30
6
trouble installing building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64
I have recently upgraded to Ubuntu Gutsy and, for the first time, am
using a 64-bit installation. After failing miserably to install R from
source, not a problem for me in the past with a 32-bit install, I went
the route of using the Debian Etch build. This went smoothly, but I am
unable to update my numerous R and BioConductor packages, getting
non-zero exit status errors on each package. Is