search for: biocsoft

Hi I am trying to install a package (bioconductor) but every time I try to install it I get this message: source("http://bioconductor.org/biocLite.R") Warning in install.packages("BiocInstaller", repos = a["BioCsoft", "URL"]) : 'lib = "C:/Program Files/R/R-3.0.0/library"' is not writable Error in install.packages("BiocInstaller", repos = a["BioCsoft", "URL"]) : unable to install packages > biocLite("methylumi") I normally use...

...Rprofile using this code (which needs editing for every version number change of Bioconductor): # Choose repositories repos <- structure(c(CRAN="http://streaming.stat.iastate.edu/CRAN", CRANextra="http://www.stats.ox.ac.uk/pub/RWin", BioCsoft="http://www.bioconductor.org/packages/2.7/bioc", Rforge="http://r-forge.r-project.org")) options(repos=repos) rm(repos) I'd like to avoid editing the version number. One hack to do so is this code that adds all repositories. setRepositories(ind=1:10)...

...uot;http://bioconductor.org/packages/3.1/bioc", "http://bioconductor.org/packages/3.1/data/annotation", + "http://bioconductor.org/packages/3.1/data/experiment", "http://bioconductor.org/packages/3.1/extra", + "http://cran.fhcrc.org"), .Names = c("BioCsoft", "BioCann", "BioCexp", + "BioCextra", "CRAN"))) > update.packages(oldPkgs="AnnotationDbi") AnnotationDbi : Version 1.0 installed in /Library/Frameworks/R.framework.develMav/Versions/3.2/Resources/library Version 1.29.17 available at htt...