search for: bioconduction

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes

--Apple-Mail-1--963012407 Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=US-ASCII; format=flowed Hi, I get exactly the same error message as in report no 6920. Furthermore, starting "update Bioconducter" the following message appears (running Mac OS X 10.3.4 (7H63)) : > {library(reposTools);update.packages2(getAllDeps=TRUE)} Synching your local package

Hi, I been trying to install bioconducter into R using the script on the bioconductor home page. However, I get this error message: > source("http://www.bioconductor.org/biocLite.R") Error in file(file, "r", encoding = encoding) : unable to open connection In addition: Warning message: unable to connect to 'www.bioconductor.org' on port 80. It is maybe

I'm sorry if the answer to my problem is buried in the archives. I have limited experience with R and I couldn't find a solution to my particular problem. I am running Mac OS X Aqua GUI v1.01 on a new G5 running os 10.3.8 with a 1.8Ghz processor and 1GB of sdram. I just downloaded bioconducter a week ago and I'm trying to cluster a matrix I created with a simulation with

reposTools is part of Bioconductor not R. Please use the correct bug repository. Note that PR#6920 does not mention any `error message' whatsoever (nor does it claim to): the message quoted help.start() Making links in per-session dir ... If /usr/bin/open is already running, it is *not* restarted, and you must switch to its window. Otherwise, be patient ... is the standard

It's trying to allocate about 850 MB. And that's just the "object that broke the camel's back". You probably really are out of memory. You could increase swap space and cross your fingers, but probably daisy creates the 10481 x 10481 distance matrix, which would be about 800 MB since each entry is 8 bytes. It may even create multiple copies. You might try increasing RAM to 4

Please ignore this is you're not interested in what my friend who works for apple had to say regarding my issue which is explained in detail at the bottom of this exchange... me: The data from this simulation has to be processed at several stages of data processing so at some point I do have to have to make a dissimilarity matrix from this large matrix, as well as ones that I have