search for: bioconducter

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes

--Apple-Mail-1--963012407 Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=US-ASCII; format=flowed Hi, I get exactly the same error message as in report no 6920. Furthermore, starting "update Bioconducter" the following message appears (running Mac OS X 10.3.4 (7H63)) : > {library(reposTools);update.packages2(getAllDeps=TRUE)} Synching your local package management information ... Packages which have been added/updated: sm sma wavethresh Note: reposTools can not access /Library/...

Hi, I been trying to install bioconducter into R using the script on the bioconductor home page. However, I get this error message: > source("http://www.bioconductor.org/biocLite.R") Error in file(file, "r", encoding = encoding) : unable to open connection In addition: Warning message: unable to connect to...

I'm sorry if the answer to my problem is buried in the archives. I have limited experience with R and I couldn't find a solution to my particular problem. I am running Mac OS X Aqua GUI v1.01 on a new G5 running os 10.3.8 with a 1.8Ghz processor and 1GB of sdram. I just downloaded bioconducter a week ago and I'm trying to cluster a matrix I created with a simulation with dimensions dim(nca35) [1] 10481 12 with size > object.size(nca352) [1] 1426204 I checked my ulimits variable on the unix terminal and it says it's unlimited as does > mem.limits() nsize vsize N...

...er@onlinehome.de wrote: > > --Apple-Mail-1--963012407 > Content-Transfer-Encoding: 7bit > Content-Type: text/plain; > charset=US-ASCII; > format=flowed > > Hi, > > I get exactly the same error message as in report no 6920. Furthermore, > starting "update Bioconducter" the following message appears (running > Mac OS X 10.3.4 (7H63)) : > > > {library(reposTools);update.packages2(getAllDeps=TRUE)} > > Synching your local package management information ... > Packages which have been added/updated: > sm > sma > wavethresh &g...

...s I'm sorry if the answer to my problem is buried in the archives. I have limited experience with R and I couldn't find a solution to my particular problem. I am running Mac OS X Aqua GUI v1.01 on a new G5 running os 10.3.8 with a 1.8Ghz processor and 1GB of sdram. I just downloaded bioconducter a week ago and I'm trying to cluster a matrix I created with a simulation with dimensions dim(nca35) [1] 10481 12 with size > object.size(nca352) [1] 1426204 I checked my ulimits variable on the unix terminal and it says it's unlimited as does > mem.limits() nsize vsize N...

...p: I'm sorry if the answer to my problem is buried in the archives. I have limited experience with R and I couldn't find a solution to my particular problem. I am running Mac OS X Aqua GUI v1.01 on a new G5 running os 10.3.8 with a 1.8Ghz processor and 1GB of sdram. I just downloaded bioconducter a week ago and I'm trying to cluster a matrix I created with a simulation with dimensions dim(nca35) [1] 10481 12 with size > object.size(nca352) [1] 1426204 I checked my ulimits variable on the unix terminal and it says it's unlimited as does > mem.limits() nsize vsize N...