search for: berina

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2020 Nov 01
0
R: sim1000G
Hi Berina, I'm not an expert on genetics. I haven't looked at the package. And I've only glanced at your question. So, this is probably not the best response. But as no one else has responded, here's some comments: (1) Have you checked if there's a function in the package to do what y...
2020 Oct 29
1
R: sim1000G
Hi, I am using the sim1000G R package to simulate data for case/control study. I can not figure out how to manipulate this code to be able to generate 10% or 50% causal SNPs in R. This is whole code provided as example on GitHub: library(sim1000G) vcf_file = "region-chr4-357-ANK2.vcf.gz" #nvariants = 442, ss=1000 vcf = readVCF( vcf_file, maxNumberOfVariants = 442 ,min_maf =