Displaying 2 results from an estimated 2 matches for "bedtool".
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bedtools
2012 Jul 24
1
temp fix: Simultaneous reads and writes from specific apps to IPoIB volume seem to conflict and kill performance.
The problem described in the subject appears NOT to be the case. It's
not that simultaneous reads and writes dramatically decrease perf, but
that the type of /writes/ being done by this app (bedtools) kills
performance. If this was a self-writ app or an infrequently used one,
I wouldn't bother writing this up, but bedtools is a fairly popular
genomics app and since many installations use gluster to host Next-Gen
sequencing data and analysis, I thought I'd follow up on my own post.
The...
2011 Oct 24
2
Comparing two gff/gtf files : de novo transcripts v/s reference
...ranscriptome we had from in-silico approaches.
Ideally we are looking to find out
1. new genes we see
2. transcripts where the start/end side is changed (upstream/downstream)
3. possible gene fusions may be because in-silico approaches were not
correct
I know some of these could be resolved with BedTools but just wondering if
Bioconductor has anything specific built in coz each time it pleasantly
surprises me.
Thanks!
-Abhi
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