search for: batchtool

...h?q=org%3Acran+system2%28+stdin&type=Code The search is probably computationally expensive and thus might only be available to GitHub account holders. The results are: - BatchJobs: R/WorkerLinux.R; stdin is "" by default, filenames generated by cfBrewTemplate aren't quoted - batchtools: callers of runOSCommand actually quote the stdin argument! https://github.com/mllg/batchtools/commit/4a5818d70c82c8842c0b8bded224dbb423b79f33 - nat: R/cmtk.R, R/xformpoints.R; stdin is tempfile(...) - credentials: R/credential-api.R; stdin is passed as-is, tempfile() or "" in de...

...amework tries to take this developer-end-user separation one step further and with a lower level API - future(), value(), resolved() - for which different parallel backends have been implemented, e.g. multicore, multisession ("PSOCK"), cluster (any parallel::makeCluster() cluster), callr, batchtools (HPC job schedulers), etc. All these have been tested to conform to the Future API specs, so we know our parallel code works regardless of which of these backends the user picks. Now, based on these basic future low-level functions, other higher level APIs have been implemented. For instance, t...

Thanks Simon, I will take note of the sensible default for core usage. I?m trying to achieve small scale parallelism, where tasks take 1-5 seconds and make fuller use of consumer hardware. Its not a HPC-worthy computation but even laptops these days come with 4 cores and I don?t see a reason to not make use of it. The goal for the current piece of code I?m working on is to bootstrap many