search for: batchmaketax

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Problem running R from within a script
2008 Nov 25
1
Problem running R from within a script
...ipt that runs the R script for each file matching a glob. R is not picking up the correct parameters *when run from the script*. When I run the command line by itself, it runs fine. The command line is this: /usr/bin/R CMD BATCH --no-restore --no-save '--args $taxFile $taxFile.taxonomy' batchMakeTax.R batchMakeTax.log Here's the output of the script: Processing /usr/bin/R CMD BATCH --no-restore --no-save '--args Call0103.xpt Call0103.xpt.taxonomy' batchMakeTax.R batchMakeTax.log /usr/lib/R/bin/BATCH: line 55: Call0103.xpt: Permission denied I do not know why it's trying to wr...