search for: basepkg

...| !is.null(attr(as.environment(x), "path"))) package <- sub("^package:", "", package[keep]) } pkgDesc <- lapply(package, packageDescription) if (length(package) == 0) stop("no valid packages were specified") basePkgs <- sapply(pkgDesc, function(x) !is.null(x$Priority) && x$Priority == "base") z$basePkgs <- package[basePkgs] if (any(!basePkgs)) { z$otherPkgs <- pkgDesc[!basePkgs] names(z$otherPkgs) <- package[!basePkgs] } loadedOnly <- lo...

...;building package '$(pkg)'" @$(MKINSTALLDIRS) $(top_builddir)/library/$(pkg) - @WHICH="@WHICH@" $(MAKE) mkRbase mkdesc2 mkdemos2 + @$(MAKE) mkRbase mkdesc2 mkdemos2 @$(INSTALL_DATA) $(srcdir)/inst/CITATION $(top_builddir)/library/$(pkg) include $(top_srcdir)/share/make/basepkg.mk @@ -45,12 +45,12 @@ mkR: mkRbase Rsimple: - @WHICH="@WHICH@" $(MAKE) mkRbase mkRsimple + @$(MAKE) mkRbase mkRsimple ## Remove files to allow this to be done repeatedly Rlazy: - at rm -f $(top_builddir)/library/$(pkg)/R/$(pkg)* - @WHICH="@WHICH@" $(MAKE) mkRbase + @...

...ags="${wl}-brtl ${wl}-G ${wl}-bexpall ${wl}-bnoentry -lc" + shlib_ldflags="${wl}-G ${wl}-bnoentry -lc" SHLIB_LIBADD="\$(LIBM)" shlib_cxxldflags="${shlib_ldflags}" if test "${GCC}" = yes; then diff -ru R-3.2.3.dist/share/make/basepkg.mk R-3.2.3/share/make/basepkg.mk --- R-3.2.3.dist/share/make/basepkg.mk 2015-03-18 23:04:12.000000000 +0000 +++ R-3.2.3/share/make/basepkg.mk 2015-12-17 12:01:02.000000000 +0000 @@ -148,7 +148,9 @@ sysdata: $(srcdir)/R/sysdata.rda @$(ECHO) "installing 'sysdata.rda'&...

...itude Rpacks]$ ls AnnotationDbi/inst/AnnDbPkg-templates/ AFFYHUEX.DB CHIMP.DB MALARIA.DB WORM.DB ANOPHELES.DB COELICOLOR.DB MOUSECHIP.DB XENOPUSCHIP.DB ARABIDOPSISCHIP.DB ECOLICHIP.DB MOUSE.DB XENOPUS.DB ARABIDOPSIS.DB ECOLI.DB ORGANISM.DB YEASTCHIP.DB BASEPKG.DB FLYCHIP.DB PFAM.DB YEAST.DB BOVINECHIP.DB FLY.DB PIGCHIP.DB YEASTNCBI.DB BOVINE.DB GO.DB PIG.DB ZEBRAFISHCHIP.DB CANINECHIP.DB HUMANCHIP.DB RATCHIP.DB ZEBRAFISH.DB CANINE.DB HUMAN.DB RAT.DB CHICKENCHIP.DB...

...make[4]: Leaving directory '/sas/data04/vinh/R-3.2.2/src/library/tools' make[4]: Entering directory '/sas/data04/vinh/R-3.2.2/src/library/tools' installing 'sysdata.rda' Error: Line starting 'Package: tools ...' is malformed! Execution halted ../../../share/make/basepkg.mk:150: recipe for target 'sysdata' failed make[4]: *** [sysdata] Error 1 make[4]: Leaving directory '/sas/data04/vinh/R-3.2.2/src/library/tools' Makefile:30: recipe for target 'all' failed make[3]: *** [all] Error 2 make[3]: Leaving directory '/sas/data04/vinh/R-3....

I recently got a request to add head() and tail() methods for Surv objects, which is quite reasonable, but not unlike other requests for logLik,? vcov, extractAIC, ...?? What they all have in common is that are methods added since creation of the survival package, and that I didn't know they existed. To try and get ahead of the curve, is there a way to list names of all of the default

...t_main (/lib/x86_64-linux-gnu/libc.so.6+0x2082f) #11 0x41fbe8 in _start (/home/josh/R/R-build/bin/exec/R+0x41fbe8) AddressSanitizer can not provide additional info. SUMMARY: AddressSanitizer: SEGV ../../../R-svn/src/main/altrep.c:305 ALTVEC_DATAPTR ==3543==ABORTING ../../../../R-svn/share/make/basepkg.mk:150: recipe for target 'sysdata' failed make[4]: *** [sysdata] Error 1 make[4]: Leaving directory '/home/josh/R/R-build/src/library/tools' Makefile:30: recipe for target 'all' failed make[3]: *** [all] Error 2 make[3]: Leaving directory '/home/josh/R/R-build/src/libra...

I have been struggling with this error message - and think I finally understand it's context. Start Line by line debugging shows me the function works: ... > saveRDS(val, mapfile) > val $variables $variables$IANA_HTTP_status_code_db [1] 0 1256 $variables$IANA_URI_scheme_db [1] 1256 3458 $variables$table_of_HTTP_status_codes [1] 4714 830 $references named list() $compressed

Hi, I am getting the following error # (R-2.9.1/src/library/methods): gmake front /bin/sh: 0403-057 Syntax error at line 1 : `;' is not expected. gmake: *** [front] Error 2 However, I am not sure what script sh is trying to execute at this point. I am building on AIX 5.3. Cheers, Loris -- Dr. Loris Bennett Computer Centre Freie Universit?t Berlin Berlin, Germany

...file: .PHONY: frontfiles frontfiles: @for f in $(FRONTFILES); do \ if test -f $(srcdir)/$${f}; then \ $(INSTALL_DATA) $(srcdir)/$${f} \ $(top_builddir)/library/$(pkg); \ fi; \ done with the associated change of front to frontfiles a few lines above. And changing: share/make/basepkg.mk as follows: front: # @for f in $(FRONTFILES); do \ # if test -f $(srcdir)/$${f}; then \ # $(INSTALL_DATA) $(srcdir)/$${f} \ # $(top_builddir)/library/$(pkg); \ # fi; \ # done fixes that problem. 3. If you try to configure after a make distclean, I get the error: config.status: err...

...inh/R-3.2.2/src/library/tools' > > make[4]: Entering directory '/sas/data04/vinh/R-3.2.2/src/library/tools' > > installing 'sysdata.rda' > > Error: Line starting 'Package: tools ...' is malformed! > > Execution halted > > ../../../share/make/basepkg.mk:150: recipe for target 'sysdata' failed > > make[4]: *** [sysdata] Error 1 > > make[4]: Leaving directory '/sas/data04/vinh/R-3.2.2/src/library/tools' > > Makefile:30: recipe for target 'all' failed > > make[3]: *** [all] Error 2 > > make[3]:...

...mended packages: yes c) But this seemingly relates to an error in the "ldpath" file at: ...R-4.3.1/etc/ldpath during the subsequent compilation step: /SOFTWARE/CODE-R/R-BASE/v4.3.1/etc/*ldpaths*: line 16: *${}*: bad substitution make[4]: *** [../../../share/make/basepkg.mk:151: sysdata] Error 1 make[4]: Leaving directory '/SOFTWARE/CODE-R/R-BASE/v4.3.1/src/library/tools' make[3]: *** [Makefile:36: all] Error 2 make[3]: Leaving directory '/SOFTWARE/CODE-R/R-BASE/v4.3.1/src/library/tools' make[2]: *** [Makefile:37: R] Error 1 m...

...make[4]: Leaving directory '/data/prj/cran/64/R/src/library/tools' make[4]: Entering directory '/data/prj/cran/64/R/src/library/tools' installing 'sysdata.rda' Error: Line starting 'Package: tools ...' is malformed! Execution halted /data/prj/cran/R-3.2.3/share/make/basepkg.mk:150: recipe for target 'sysdata' failed make[4]: *** [sysdata] Error 1 make[4]: Leaving directory '/data/prj/cran/64/R/src/library/tools' Makefile:30: recipe for target 'all' failed make[3]: *** [all] Error 2 make[3]: Leaving directory '/data/prj/cran/64/R/src/librar...

...ry '/data/prj/cran/64/R/src/library/tools' > make[4]: Entering directory '/data/prj/cran/64/R/src/library/tools' > installing 'sysdata.rda' > Error: Line starting 'Package: tools ...' is malformed! > Execution halted > /data/prj/cran/R-3.2.3/share/make/basepkg.mk:150: recipe for target > 'sysdata' failed > make[4]: *** [sysdata] Error 1 > make[4]: Leaving directory '/data/prj/cran/64/R/src/library/tools' > Makefile:30: recipe for target 'all' failed > make[3]: *** [all] Error 2 > make[3]: Leaving directory '...