search for: bakslv

...p.o saveload.o scan.o seq.o sort.o source.o split.o subassign.o subscript.o subset.o summary.o unique.o util.o version.o ../lib/libgraphics.a ../lib/libunix.a ../lib/libappl.a ../lib/libmath.a -lSM -lICE -L/usr/X11R6/lib -lX11 -lreadline -ldl -lncurses -lm ../lib/libappl.a(uncmin.o): In function `bakslv': uncmin.o(.text+0x410): multiple definition of `bakslv' ../lib/libappl.a(bakslv.o):/home/fredrigl/R-0.62.3/src/appl/bakslv.c:31: first defined here ld: Warning: size of symbol `bakslv' changed from 120 to 338 in uncmin.o ../lib/libappl.a(dqrdc.o): In function `dqrdc': dqrdc.o(.text...

..., it returns, after some lines which appear normal, the following error messages (for the GNU make): ---------------------------------------------------------------------------- ---- ... make[3]: Entering directory `/home/ppp/paradis/R/R-1.0.1/src/appl' cr libappl.a Rsock.o S_compat.o approx.o bakslv.o binning.o chisqsim.o chull.o c poly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o loglin.o lowess.o mac har.o massdist.o pretty.o pythag.o rowsum.o sock.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpo fa.o dposl.o dqrdc.o dqr...

...data in as a table, and then made the columns into objects (or vectors? i.e. I did data2=allmydata$data2) and named them by node number. The tree is converted from ape. Thanks very much, and happy to provide more info... Traceback for the first error gives: > > traceback() 9: .C("bakslv", t = r, ldt = nrow(r), n = k, b = x, ldb = k, nb = nb, x = matrix(0, k, nb), job = job, info = integer(1L), DUP = FALSE, PACKAGE = "base") 8: backsolve(l, x, k = k, upper.tri = upper.tri, transpose = transpose) 7: forwardsolve(vh, a, upper.tri = TRUE, transpose = TRU...

...uns without any problems but during 'make' I receive the following error-message: [......] g77 -mieee -g -O2 -c dtrco.f -o dtrco.o g77 -mieee -g -O2 -c dtrsl.f -o dtrsl.o g77 -mieee -g -O2 -c eigen.f -o eigen.o g77 -mieee -g -O2 -c lminfl.f -o lminfl.o ar cr libappl.a Rsock.o approx.o bakslv.o binning.o chisqsim.o chull.o cpoly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rowsum.o sock.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dq...

...------------------------------ ## Subsequently the "make" failed with this error: /usr/local/include/stdio.h:186: error: conflicting types for `FILE' /usr/local/lib/gcc-lib/sparc-sun-solaris2.9/3.3.1/include/floatingpoint.h:52: error: previous declaration of `FILE' make[3]: *** [bakslv.o] Error 1 make[3]: Leaving directory `/u/home/lenon/R/ru231/R-2.3.1/src/appl' make[2]: *** [R] Error 2 make[2]: Leaving directory `/u/home/lenon/R/ru231/R-2.3.1/src/appl' make[1]: *** [R] Error 1 make[1]: Leaving directory `/u/home/lenon/R/ru231/R-2.3.1/src' make: *** [R] Error 1 I di...

...../appl/libappl.a(lbfgsb.o) ddot_ ../appl/libappl.a(lbfgsb.o) dswap_ ../appl/libappl.a(dqrdc.o) dnrm2_ ../appl/libappl.a(uncmin.o) dtrsm_ ../appl/libappl.a(bakslv.o) dcopy_ ../appl/libappl.a(bakslv.o) drotg_ ../appl/libappl.a(dsvdc.o) dgemm_ array.o dasum_ ../appl/libappl.a(dpoco.o) ld: fatal: Symbol referencing errors. No output written to R.b...

...require(lars) require(SparseM) example(lars) ....[snip] lars> object3 <- lars(x,y,type="for") # Can use abbreviations Error in base::backsolve(r, x, k = ncol(r), upper.tri = TRUE, transpose = FALSE, : NA/NaN/Inf in foreign function call (arg 4) > traceback() 10: .C("bakslv", t = r, ldt = nrow(r), n = k, b = x, ldb = k, nb = nb, x = matrix(0, k, nb), job = job, info = integer(1L), DUP = FALSE, PACKAGE = "base") 9: base::backsolve(r, x, k = ncol(r), upper.tri = TRUE, transpose = FALSE, ...) 8: backsolve(R, backsolvet(R, Sign...

...IONS/R-2.0.1/bin And within the bin, I had many new files including an executable (theoretically) R file: -rwxr-xr-x 1 root 6099 Mar 29 13:18 R I then ran 'make'. Here are the last few lines from the 'make' output to the screen: rm -f libappl.a false cr libappl.a approx.o bakslv.o bandwidths.o binning.o chull.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rcont.o rowsum.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o...

...nclude/R_ext make[2]: Leaving directory `/opt/local/R-1.0.0/src/include' make[2]: Entering directory `/opt/local/R-1.0.0/src/appl' make[3]: Entering directory `/opt/local/R-1.0.0/src/appl' making Rsock.d from Rsock.c making S_compat.d from S_compat.c making approx.d from approx.c making bakslv.d from bakslv.c making binning.d from binning.c making chisqsim.d from chisqsim.c making chull.d from chull.c making cpoly.d from cpoly.c making cumsum.d from cumsum.c making distance.d from distance.c making fft.d from fft.c making fmin.d from fmin.c making fortran.d from fortran.c making lbfgsb.d...

...Tcl/Tk support: no R profiling support: yes R as a shared library: no cd build/R-1.4.0 \ && make all \ && touch XHIER_BUILT creating src/scripts/R.fe mkdir ../../bin mkdir ../../include mkdir ../../../include/R_ext making approx.d from approx.c making bakslv.d from bakslv.c making bandwidths.d from bandwidths.c making binning.d from binning.c making chull.d from chull.c making cpoly.d from cpoly.c making cumsum.d from cumsum.c making fft.d from fft.c making fmin.d from fmin.c making integrate.d from integrate.c making lbfgsb.d from lbfgsb.c making logl...

...fa5/gilp/R-versions/R-devel/src/include' make[2]: Entering directory `/home/mfa5/gilp/R-versions/R-devel/src/appl' make[3]: Entering directory `/home/mfa5/gilp/R-versions/R-devel/src/appl' making Rsock.d from Rsock.c making S_compat.d from S_compat.c making approx.d from approx.c making bakslv.d from bakslv.c making binning.d from binning.c making chisqsim.d from chisqsim.c making chull.d from chull.c making cpoly.d from cpoly.c making cumsum.d from cumsum.c making distance.d from distance.c making fft.d from fft.c making fmin.d from fmin.c making fortran.d from fortran.c making lbfgsb.d...

...bull.o pweibull.o qweibull.o rweibull.o ranlib ../lib/libmath.a make[2]: Leaving directory `/home/user_14/jlund/src/R-0.60.1/src/math' cd appl; make make[2]: Entering directory `/home/user_14/jlund/src/R-0.60.1/src/appl' gcc -g -I../include -c approx.c -o approx.o gcc -g -I../include -c bakslv.c -o bakslv.o gcc -g -I../include -c binning.c -o binning.o gcc -g -I../include -c blas.c -o blas.o gcc -g -I../include -c zblas.c -o zblas.o gcc -g -I../include -c ch2inv.c -o ch2inv.o gcc -g -I../include -c chol.c -o chol.o gcc -g -I../include -c cpoly.c -o cpoly.o gcc -g -I../include...

Recent sensible changes to the dynload mechanism have made an old problem resurface: how should we deal with packages which contain Fortran code and may need to be linked against additional libraries such as -lf2c? The current consensus is that extra Fortran libraries maybe needed are handled via the make variable FLIBS, and that `-lf2c' or `-lg2c' are added by default if g77 is used.

...9;s rule of thumb]. o detach(2) now works. o format() doesn't drop names anymore. o format.pval() works with NAs. o print.[summary.][g]lm() functions print numbers better formatted. o legend() now also works properly in log coordinates. o backsolve() now working; bakslv.c not depending on Fortran_underscores. o Tick marks acting up on log axes in postscript (fix from Martyn Plummer) o The Rd format has a new section \details{} (needed for proper Sd2Rd translation). \R was not understood for nroff conversions, longer dashes (-- and --- in latex syntax)...

...9;s rule of thumb]. o detach(2) now works. o format() doesn't drop names anymore. o format.pval() works with NAs. o print.[summary.][g]lm() functions print numbers better formatted. o legend() now also works properly in log coordinates. o backsolve() now working; bakslv.c not depending on Fortran_underscores. o Tick marks acting up on log axes in postscript (fix from Martyn Plummer) o The Rd format has a new section \details{} (needed for proper Sd2Rd translation). \R was not understood for nroff conversions, longer dashes (-- and --- in latex syntax)...

...9;s rule of thumb]. o detach(2) now works. o format() doesn't drop names anymore. o format.pval() works with NAs. o print.[summary.][g]lm() functions print numbers better formatted. o legend() now also works properly in log coordinates. o backsolve() now working; bakslv.c not depending on Fortran_underscores. o Tick marks acting up on log axes in postscript (fix from Martyn Plummer) o The Rd format has a new section \details{} (needed for proper Sd2Rd translation). \R was not understood for nroff conversions, longer dashes (-- and --- in latex syntax)...

...dqrcf_ dotcode.o dtrsl_ dotcode.o dpoco_ dotcode.o dposl_ dotcode.o result_ ../lib/libappl.a(uncmin.o) dcopy_ ../lib/libappl.a(bakslv.o) dqrsl_ dotcode.o root1d_ dotcode.o dpodi_ dotcode.o ch2inv_ dotcode.o dqrdc_ dotcode.o rg_ dotcode.o dqrrsd_...

...tic.o Rf_qgamma arithmetic.o Rf_qhyper arithmetic.o Rf_qlogis arithmetic.o Rf_qlnorm arithmetic.o Rf_qnbeta arithmetic.o Rf_qnorm5 arithmetic.o bakslv registration.o Rf_rbinom random.o Rf_rchisq random.o Rf_qtukey arithmetic.o Rf_rgamma random.o Rf_rhyper random.o Rf_rlogis...

...rectory `/mn/vega/astro/local/src/rstat/R-0.63.3/src/appl' gcc -ieee_with_inexact -g -I../include -I../../src/include -c S_compat.c -o S_compat.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c approx.c -o approx.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c bakslv.c -o bakslv.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c binning.c -o binning.o f77 -g -fpe3 -c ch2inv.f -o ch2inv.o f77 -g -fpe3 -c chol.f -o chol.o gcc -ieee_with_inexact -g -I../include -I../../src/include -c cpoly.c -o cpoly.o gcc -ieee_with_inexact -g -I../include -I../...

...tic.o Rf_qgamma arithmetic.o Rf_qhyper arithmetic.o Rf_qlogis arithmetic.o Rf_qlnorm arithmetic.o Rf_qnbeta arithmetic.o Rf_qnorm5 arithmetic.o bakslv registration.o Rf_rbinom random.o Rf_rchisq random.o Rf_qtukey arithmetic.o Rf_rgamma random.o Rf_rhyper random.o Rf_rlogis...