Displaying 3 results from an estimated 3 matches for "bacteroidetes".
2011 Apr 06
1
Creating a symmetric contingency table from two vectors with different length of levels in R
..."Amphibia"
"Anthozoa" "Aquificae (class)"
and so on .........
98 Levels: Aconoidasida Actinobacteria (class) ....
and the other vector has 105 levels
TotalData1$Taxa.2
[1] Flavobacteria Proteobacteria
Bacteroidetes/Chlorobi group Bacteria
[5] Epsilonproteobacteria Epsilonproteobacteria
Epsilonproteobacteria
and so on ..........
105 Levels: Acidobacteria Aconoidasida Actinobacteria (class) ....
Now I want to create a symmetric contingency table.
Any quick idea will be really helpful.
Best...
2010 Oct 28
1
Heatmap construction problems
I am very new to R and don't have any computer program experience
whatsoever. I am trying to generate a heatmap of the following data:
Phylum,AI,AJT,BY,GA,Grt,Sm
Acidobacteria,0.5,0.7,2.7,0.1,2.6,1.0
Actinobacteria,33.7,65.1,9.7,2.0,3.9,2.1
Bacteroidetes,9.7,5.6,0.7,13.2,41.1,21.6
CCM11b,0.0,0.0,0.0,0.0,0.0,0.1
Chlamydiae,0.1,0.1,0.0,0.0,1.0,0.2
Chlorobi,0.0,0.0,0.0,0.0,0.7,1.0
Chloroflexi,0.1,0.2,0.6,0.2,0.8,0.6
Cyanobacteria,18.7,0.0,1.0,1.5,0.9,0.3
Ellusimicrobiales,0.0,0.0,0.0,0.0,0.0,0.0
Firmicutes,1.0,7.6,8.3,31.9,2.1,6.9
Gemmatimonad...
2013 Mar 19
1
write random sampling as table output
...TM7 WS3 Gemmatimonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlorobi Firmicutes Nitrospirae Chloroflexi Verrucomicrobia Alphaproteobacteria Betaproteobacteria Deltaproteobacteria Gammaproteobacteria uncl.Proteobacteria Actinobacteria Bacteroidetes Cyanobacteria Planctomycetes unclassified
Gi10Sep12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002583979 0 0.004306632 0 0 0 0 0 0.001722653 0.000861326 0.004306632 0.006890612 0 0 0.003445306 0.005167959 0.192075797 0.074074074 0.011197244 0.029285099 0.01205857 0.312661499 0.10335917...