search for: bacaro

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2006 Jun 04
1
How to use lmer function and multicomp package?
...(fixed factor) = cla (R variable) plot number, 98 levels each with 4 replicates (random factor within "cla") = plotti (R variable) number of species, totally 392 counts, response variable = sp (R variable) Now, I started my analysis as follow (after the creation of the data.frame "bacaro"): mod1<-lmer(sp~cla+(1|cla:plotti), data=bacaro, family=poisson(link=log)) > summary(mod1) #sunto del modello Generalized linear mixed model fit using PQL Formula: sp ~ cla + (1 | cla:plotti) Data: bacaro Family: poisson(log link) AIC BIC logLik deviance 4...
2006 May 25
0
Nested design and GLM: ....continue
...s (fixed factor) = cla (R variable) plot number, 98 levels each with 4 replicates (random factor within "cla") = plotti (R variable) number of species, totally 392 counts, response variable = sp (R variable) Now, I startd my analysis as follow (after the creation of the data.frame "bacaro"): mod1<-lmer(sp~cla+(1|cla:plotti), data=bacaro, family=poisson(link=log)) > summary(mod1) #sunto del modello Generalized linear mixed model fit using PQL Formula: sp ~ cla + (1 | cla:plotti) Data: bacaro Family: poisson(log link) AIC BIC logLik deviance 4...
2007 Oct 05
0
use of specaccum in routine procedure
...n my opinion that the number of randomization for calculation of an approximative mean of species richness for dimension_15 should be equal to....infinite??? Does someone know if some compiled function in R could provide help for my problems or where can I look for a solution? Many thanks Giovanni Bacaro -- Dr. Giovanni Bacaro Universit? degli Studi di Siena Dipartimento di Scienze Ambientali "G. Sarfatti" Via P.A. Mattioli 4 53100 Siena tel. 0577 235415 email: bacaro a unisi.it
2006 May 20
0
GLM with nested design
...dering the nested nature of my design? I'm sorry but I don't know the right package to use. 3) for the Anova analysis I'd like use a post-hoc comparison between pairwise classes. What is the right procedure to do this? Is this analysis performed in R? Thanks Giovanni -- Dr. Giovanni Bacaro Universit? degli Studi di Siena Dipartimento di Scienze Ambientali "G. Sarfatti" Via P.A. Mattioli 4 53100 Siena tel. 0577 235408 email: bacaro a unisi.it
2006 May 18
4
Nested design
Dear list members, I'd like to perform a glm analysis with a hierarchically nested design. In particular, I have one fixed factor ("Land Use Classes") with three levels and a random factor ("quadrat") nested within Land Use Classes with different levels per classes (class artificial = 1 quadrat; class crops = 67 quadrats; and class seminatural = 30 quadrats). I have four