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2003 Sep 08
2
Re: clustering polypeptide sequences
Hi Peter, You didn't give a very specific example, but it seems to me that what you wish to do is not really complicated. I suppose you have created a table of sequences vs. say hyprophobicity, charge, etc..., something like... seq hydroph arom b0001 0.104762 0.000000 b0002 0.035122 0.065854 b0003 0.024193 0.070968 b0004 -0.096729 0.084112 b0005 -0.973469 0.091837 b0006 -0.402713 0.108527 b0007 0.680672 0.123950 b0008 -0.209779 0.072555 b0009 -0.013334 0.046154 b0010 0.952128 0.143617 suppose you have these data into a data frame called myseqs [see...