search for: auk

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2015 Aug 31
2
R doesn't compile on FreeBSD 10.2
On FreeBSD 10.2, I get the following error when compiling R from the Subversion trunk (with "configure && make"): cc -shared -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o mkdir ../../../../library/tools/libs installing 'sysdata.rda' Error in dyn.load(file, DLLpath = DLLpath, ...) :
2015 Aug 31
2
R doesn't compile on FreeBSD 10.2
...ibs/tools.so': /usr/home/davor/R-3.2.2/library/tools/libs/tools.so: Undefined symbol "R_ClassSymbol" Error: unable to load R code in package 'tools' Execution halted > Here is a series of checks for that symbol (results from a working Linux > system): > > auk% nm -g bin/exec/R | grep R_ClassSymbol > 0000000000962ec0 B R_ClassSymbol > > auk% nm -g src/main/main.o | grep R_ClassSymbol > 0000000000000008 C R_ClassSymbol > > auk% nm -g library/tools/libs/tools.so | grep R_ClassSymbol > U R_ClassSymbol > > auk%...
2015 Aug 31
0
R doesn't compile on FreeBSD 10.2
...ed in /usr/home/davor/R-dev/R-trunk/src/library/tools > > The system is running a 64-bit FreeBSD 10.2-RELEASE-p4, with clang 3.4.1 > and gfortran 4.8.5. > > Configure log is attached. > > Davor Here is a series of checks for that symbol (results from a working Linux system): auk% nm -g bin/exec/R | grep R_ClassSymbol 0000000000962ec0 B R_ClassSymbol auk% nm -g src/main/main.o | grep R_ClassSymbol 0000000000000008 C R_ClassSymbol auk% nm -g library/tools/libs/tools.so | grep R_ClassSymbol U R_ClassSymbol auk% nm -g src/library/tools/src/gramRd.o | gre...
2011 Jul 11
4
extremely slow syncing on btrfs with 2.6.39.1
....00 I''ll switch to 3.0 soon, but, given the fact that we''re going to be running MeeGo on 2.6.39 probably for a while, I was wondering if anyone knows off the top of their heads if this issue is known/identified. If not then I''ll need to make someone do some patching ;). Auke -- To unsubscribe from this list: send the line "unsubscribe linux-btrfs" in the body of a message to majordomo@vger.kernel.org More majordomo info at http://vger.kernel.org/majordomo-info.html
2011 Jul 26
49
[Bug 39550] New: Brightness stuck to low value after suspend/resume
...resume Product: xorg Version: unspecified Platform: Other OS/Version: All Status: NEW Severity: normal Priority: medium Component: Driver/nouveau AssignedTo: nouveau at lists.freedesktop.org ReportedBy: auke at tulcod.com QAContact: xorg-team at lists.x.org Created an attachment (id=49565) --> (https://bugs.freedesktop.org/attachment.cgi?id=49565) vbios After a suspend/resume cycle, my brightness is stuck to some low value which can't be changed with the brightness buttons or nvap...
2015 Sep 01
2
R doesn't compile on FreeBSD 10.2
...s/libs/tools.so: Undefined symbol "R_ClassSymbol" >> Error: unable to load R code in package 'tools' >> Execution halted >> >>> Here is a series of checks for that symbol (results from a working Linux >>> system): >>> >>> auk% nm -g bin/exec/R | grep R_ClassSymbol >>> 0000000000962ec0 B R_ClassSymbol >>> >>> auk% nm -g src/main/main.o | grep R_ClassSymbol >>> 0000000000000008 C R_ClassSymbol >>> >>> auk% nm -g library/tools/libs/tools.so | grep R_ClassSymbol >&g...
2012 Jun 05
4
Re: [systemd-devel] systemd-udevd: excessive I/O usage
2012/6/5 Kok, Auke-jan H <auke-jan.h.kok@intel.com> wrote on systemd-devel list: > It seems your system is taking well into 15+ seconds before btrfs is > actually *ready* on your system, which seems to be the main hiccup > (note, speculation here). I''ve personally become a bit displeased with...
2009 Oct 19
2
Time Series Data
...all and thanks in advance. I am regressing Time and Weight, and then predicting Weight at different Time. The format of the Time data is day/month/year. How can I get R to use time series data such as this? Keith -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox at noaa.gov marlinkcox at gmail.com U.S. (907) 789-6603
2001 Mar 20
3
Newbie question about by() -- update
Sorry about the lack of detail. I am running R v.1.2.2. I can recast my question (which I think I have partially answered) more succinctly as follows: 1. This seems to work (note that group takes values 1,2,3,4, or 5): my.newfun <- function(x) myfile <- lm(award ~ ilogemp + ilogage, x) test.by <- by(wintemp, as.factor(wintemp$group), my.newfun) 2. This does not work (leaving aside
2000 Jul 22
1
maketitle garbles the title in package nnet (PR#613)
The TITLE for the nnet package is garbled: it comes out as nnet Feed-forward neural networks and multinomial log-linear nnet Feed-forward neural networks and multinomial log-linear models The problem is in maketitle: auk% cat DESCRIPTION Bundle: VR Version: 6.1-9 Date: 2000/07/11 Depends: R (>= 1.1) Author: S original by Venables & Ripley. R port by Brian Ripley <ripley@stats.ox.ac.uk>, following earlier work by Kurt Hornik and Albrecht Gebhardt. BundleDescription: Various functions from the libra...
2015 Sep 01
0
R doesn't compile on FreeBSD 10.2
...e/davor/R-3.2.2/library/tools/libs/tools.so: Undefined symbol "R_ClassSymbol" > Error: unable to load R code in package 'tools' > Execution halted > >> Here is a series of checks for that symbol (results from a working Linux >> system): >> >> auk% nm -g bin/exec/R | grep R_ClassSymbol >> 0000000000962ec0 B R_ClassSymbol >> >> auk% nm -g src/main/main.o | grep R_ClassSymbol >> 0000000000000008 C R_ClassSymbol >> >> auk% nm -g library/tools/libs/tools.so | grep R_ClassSymbol >> U...
2008 Feb 25
4
New version of X11, png and jpeg
...gt;= '2.7.0') grDevices::X11.options(type="Cairo") }) Please try these out and let us know how you get on. As a check, try the TestChars() examples in ?points - on one Solaris 10 system a few of the symbol font characters were incorrect. It worked on an FC5 system with auk% pkg-config --modversion pango 1.12.4 auk% pkg-config --modversion cairo 1.0.4 so the versions required are not all recent. Although these devices would in principle work on Mac OS X, neither cairo nor pango is readily available. We are working on other versions for Mac OS (X11 based on cairo/...
2001 May 02
1
subdirs in package src dir
Sometimes I find it useful to put C or Fortran sources under subdirs of "mypackage/src", especially to distinguish between my own files and e.g. lapack or blas sources. To get this working I would need a Makefile in my package which contains the appropriate dependencies to these sources in subdirs. But I don't want to add a complete Makefile, I want only a Makevars file containing
2015 Sep 01
0
R doesn't compile on FreeBSD 10.2
...bol "R_ClassSymbol" >>> Error: unable to load R code in package 'tools' >>> Execution halted >>> >>>> Here is a series of checks for that symbol (results from a working Linux >>>> system): >>>> >>>> auk% nm -g bin/exec/R | grep R_ClassSymbol >>>> 0000000000962ec0 B R_ClassSymbol >>>> >>>> auk% nm -g src/main/main.o | grep R_ClassSymbol >>>> 0000000000000008 C R_ClassSymbol >>>> >>>> auk% nm -g library/tools/libs/tools.so | g...
2010 Jan 11
1
Point plot comparisions
...a6 4.894238 4.69 4 c c4 3.986347 3.40 5 c c5 4.099442 3.58 6 c c6 4.150522 3.64 7 h h4 5.187792 6.32 8 h h5 6.713422 6.44 9 h h6 5.168555 5.62 Keith -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox@noaa.gov marlinkcox@gmail.com U.S. (907) 789-6603 [[alternative HTML version deleted]]
2010 Jan 22
1
first and second derivative calculation
...imilarly plot the curve for both the first and second derivatives. I can calculate the derivatives by hand but would like to get R to do this for me. by hand: H'(t) = 3*t^2 - 12*t + 5 H''(t) = 6*t-12 Keith -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox@noaa.gov marlinkcox@gmail.com U.S. (907) 789-6603 [[alternative HTML version deleted]]
2009 Jul 30
2
wireframe color
...list("Resistance error (%)",rot=16), ylab = list("Length error (%)",rot=118), scales = list(arrows = FALSE), screen = list(z = 20, x = -57, y = 5)) Thanks ahead of time. -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox@noaa.gov marlinkcox@gmail.com U.S. (907) 789-6603 [[alternative HTML version deleted]]
2009 Aug 10
0
Matrix addition and multiplication
...1,]) num.y.col <- length(Y[1,]) num.rows <- length(X[,1]) Z <- matrix(nrow=num.rows, ncol=num.x.col*num.y.col) for( i in 1:num.rows) { Z[i,] <- as.vector(X[i,] + ((Y[i,])^2 %*% t(X[i,])^-1 )) } -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox@noaa.gov marlinkcox@gmail.com U.S. (907) 789-6603 -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox@noaa.gov marlinkcox@gmail...
2010 Aug 11
0
CRAN installation under Gentoo
...ught it would be useful to others who use Gentoo (http://www.gentoo.org/) to know that you can now install CRAN and bioconductor packages using Gentoo's package management systme Portage (http://www.gentoo.org/doc/en/handbook/handbook-x86.xml?part=2&chap=1) This is thanks to the efforts of Auke Booij as part of his Google Summer of Code project. Instructions for how to use this excellent feature are on the gentoo-science mailing list... http://archives.gentoo.org/gentoo-science/msg_f78221efd789728a2a60fe0fdc429337.xml (The archives also contain various weekly updates). This provides...
2011 Mar 14
2
color under lm line
...example, I do not want the area under the curve red, but rather under the llm line. x=seq(0,5,len=100) y=-(x-5)^2 llm<-lm(y~x) plot(x,y) polygon(c(x,x[length(x)]), c(y, y[1]), col='red') abline(llm) keith -- M. Keith Cox, Ph.D. Alaska NOAA Fisheries, National Marine Fisheries Service Auke Bay Laboratories 17109 Pt. Lena Loop Rd. Juneau, AK 99801 Keith.Cox@noaa.gov marlinkcox@gmail.com U.S. (907) 789-6603 [[alternative HTML version deleted]]