search for: atoll

I have been trying to make use of the odesolve library on my university's Linux grid - currently R version 2.0.1 is installed and the system runs 64-bit Scientific Linux based on Redhat. I cannot seem to get lsoda working when I define the model as a shared C library. For example, the following snippet uses the mymod.c example bundled with the package: ### START rm(list=ls())

Hello, I am working on replacing atoi () and atol() functions with strtol() and strtoul() . I came across many files which uses statement like these time_t secs= atoi(data_span.c_str()), here time_t Datatype is not known but wikipedia says that it is integer so is it necessary to replace atoi with strtol over here ?? And is their any document which helps me what each file function does like

Hello, I came across the file *omega.cc* which is in directory* xapain-application/omega/* In this file , atoi is used in *Percentage Relevance cutoff *(293 line no) as Percentage lies between 0-100 their is no need to modify atoi . But do we need to check for error's ? Second Implementation is in *collapsing* (301) in which we collapse set of document under a key,range of this key has not

On Thu, Dec 18, 2014 at 11:38:42PM +0000, James Aylett wrote: > Collapsing is done using a valueno (you can tell because collapse_key > is of type Xapian::valueno), which is a 32 bit unsigned integer (see > here: > https://getting-started-with-xapian.readthedocs.org/en/latest/concepts/indexing/values.html). > For 32 bit unsigned you need unsigned long. Xapian::valueno is actually a

Dear Hank, Last question first: really, only you can say for sure if 4e-281 and 5e-11 are small enough; it depends on the units you measure your state variables in. However, this strategy cannot get the state variables to exactly 0. Obviously, you could get closer to 0.0 faster by setting the derivatives even larger in absolute value. You may run into problems with the solver when the

On Sat, Dec 20, 2014 at 12:42:08AM +0530, Priyank Bhatt wrote: > As James said I am attaching two file *date.cc* and *datematchdecider.cc* Please send patches, not complete source files: http://trac.xapian.org/browser/git/xapian-core/HACKING#L1176 Patches are much smaller, and don't require the reviewer to work out the exact version of the source file you started from. Cheers, Olly

Hello , I came across this function *HtmlParser::decode_entities(string &s)* in *xapian-application/omega/htmlparse.cc* which basically does is extract hex value if any or extract number.For extracting number atoi is used and value returned by it is stored in variable "val" , I think so replacing atoi with strtoul would be useful here as number can have larger value although the

Dear R users: I encountered difficulties in michaelis-menten equation. I found that when I use right model definiens, I got wrong Km vlaue, and I got right Km value when i use wrong model definiens. The value of Vd and Vmax are correct in these two models. #-----right model definiens-------- PKindex<-data.frame(time=c(0,1,2,4,6,8,10,12,16,20,24),

Hello, I wanted to test the odesolve package and tried to use compiled C-code. But when I do: erg <- lsoda(y, times, "mond", parms, rtol, atol, tcrit=NULL, jacfunc=NULL, verbose=FALSE, dllname="mond", hmin=0, hmax=Inf) I get the error message: Error in lsoda(y, times, "mond", parms, rtol, atol, tcrit = NULL, jacfunc =

Dear all, I am trying to evaluate the optimisation behaviour of a function. Originally I have optimised a model with real data and got a set of parameters. Now I am creating simulated data sets based on these estimates. With these simulations I am estimating the parameters again to see how variable the estimation is. To this end I have written a loop which should generate a new simulated data

I am running R 1.2.3 with ESS5.1.18 with Windows 98. I am trying to use lsoda in the odesolve apckage and am having problems. Question: The return value of the function of the system of ode's has to be a list that includes first, the ode's and second, "a vector (possibly with a `names' attribute) of global values that are required at each point in `times'." I

...ined here trirast.o(.text+0x1260): In function `atoi': : multiple definition of `atoi' main.o(.text+0x14a0): first defined here trirast.o(.text+0x1290): In function `atol': : multiple definition of `atol' main.o(.text+0x14d0): first defined here trirast.o(.text+0x12c0): In function `atoll': : multiple definition of `atoll' main.o(.text+0x1500): first defined here trirast.o(.text+0x12f0): In function `atof': : multiple definition of `atof' main.o(.text+0x1530): first defined here collect2: ld returned 1 exit status make: *** [trirast] Error 1 16:25|paul at tabu:~/>

I'm trying to use odesolve for integrating various series of coupled 1st order differential equations (derived from a system of enzymatic catalysis and copied below, apologies for the excessively long set of parameters). The thing that confuses me is that, whilst I can run the function rk4: out <- rk4(y=y,times=times,func=func, parms=parms) and the results look not unreasonable:

...arglist shows too much information.... $ /home/edwin/llvm-svn/obj42/./prev-gcc/cc1 charset.i vprintf getchar fgetc_unlocked getc_unlocked getchar_unlocked putchar fputc_unlocked putc_unlocked putchar_unlocked feof_unlocked ferror_unlocked gnu_dev_major gnu_dev_minor gnu_dev_makedev atof atoi atol atoll stat lstat fstat mknod cpp_in_system_header ustrcmp ustrncmp ustrcspn ustrlen uxstrdup ustrchr ufputs one_utf8_to_cppchar one_cppchar_to_utf8 one_utf8_to_utf32 one_utf32_to_utf8 one_utf8_to_utf16 one_utf16_to_utf8 conversion_loop convert_utf8_utf16 convert_utf8_utf32 convert_utf16_utf8 convert_utf3...

I'm solving the differential equation dy/dx = xy-1 with y(0) = sqrt(pi/2). This can be used in computing the tail of the normal distribution. (The actual solution is y(x) = exp(x^2/2) * Integral_x_inf {exp(-t^2/2) dt} = Integral_0_inf {exp (-xt - t^2/2) dt}. For large x, y ~ 1/x, starting around x~2.) I'm testing both lsoda and rk4 from the package odesolve. rk4 is accurate using step

...to lagoons? habitats? lagoons*habitat? transects? Here is my code: res <- aov(COVER ~ HABITAT + Error(HABITAT+LAGOON+LAGOON/HABITAT), data=cov) summary(res) and I get Sum Sq for each to calculate variance components: Error: STRATE Df Sum Sq Mean Sq STRATE 5 4493.1 898.6 Error: ATOLL Df Sum Sq Mean Sq F value Pr(>F) Residuals 5 3340.5 668.1 Error: STRATE:ATOLL Df Sum Sq Mean Sq F value Pr(>F) Residuals 18 2442.71 135.71 Error: Within Df Sum Sq Mean Sq F value Pr(>F) Residuals 145 6422.0 44.3 My error message seems to come fr...

Interestingly, in the .i file there are 2 __builtin_alloca, and EmitBuiltinAlloca is only being called once. Andrew On 2/16/08, Andrew Lenharth <andrewl at lenharth.org> wrote: > libcpp/charset.c:631 turns into: > > %tmp16 = tail call i64 @strlen( i8* %to ) nounwind readonly > ; <i64> [#uses=1] > %tmp18 = tail call i64 @strlen( i8* %from ) nounwind

Hi all, (thanks to Reid, who gave nice advice) the fibonacci function code works now. Please find attached file. but... the performance is adequate, say, for byte-code interpretation mode and not for optimized JITing. fibonacci function of 35 from attached file is more then 100 times slower then the following code compiled with "gcc -O2" : ----------- #include <iostream> int

...tname.o: In function `atoi': Hostname.c:(.text+0xf0): multiple definition of `atoi' av.o:av.c:(.text+0xf0): first defined here Hostname.o: In function `atol': Hostname.c:(.text+0x110): multiple definition of `atol' av.o:av.c:(.text+0x110): first defined here Hostname.o: In function `atoll': Hostname.c:(.text+0x130): multiple definition of `atoll' av.o:av.c:(.text+0x130): first defined here Hostname.o: In function `__strcspn_c1': Hostname.c:(.text+0x150): multiple definition of `__strcspn_c1' av.o:av.c:(.text+0x150): first defined here Hostname.o: In function `__strcs...

Dear All, I like to simulate a physiologically based pharmacokinetics model using R but am having a problem with the daspk routine. The same problem has been implemented in Berkeley madonna and Winbugs so that I know that it is working. However, with daspk it is not, and the numbers are everywhere! Please see the following and let me know if I am missing something... Thanks a lot in advance,