Displaying 5 results from an estimated 5 matches for "atasever".
2017 Aug 17
2
PAM Clustering
...t;,dec='.')
> library(cluster)
> cluster.pam = pam(MYdata,10)
> table(cluster.pam$clustering)
> filenameclu = paste("clusters", ".txt")
> write.table(cluster.pam$clustering, file=filenameclu,sep=",")
>
>
> 2017-08-17 10:28 GMT+02:00 Sema Atasever <s.atasever at gmail.com>:
>
>> Dear Authorized Sir / Madam,
>>
>> I have a data set in which each row indicates an amino asid and each
>> column corresponds
>> to a feature (in total 539 features).
>> I want to use PAM Clustering usign this data set.
&g...
2017 Aug 17
0
PAM Clustering
...ilarity matrix. If diss=FALSE then "euclidean" was use.So,
I interpret that a matrix of dissimilarity is generated automatically.
Problems may be in your data. Indeed
pam(ruspini, 4)$diss
write a dissimilaty matrix
while
pam(MYdata,10)$diss
wite NULL
2017-08-17 16:03 GMT+02:00 Sema Atasever <s.atasever at gmail.com>:
> Dear Germano,
>
> Thank you for your fast reply,
>
> In the above code, *MYData *is the actual data set.
>
> Do not we need to convert *MYData to *the dissimilarity matrix using
> *pam(as.dist(**MYData**), k = 10, diss = TRUE*)* code lin...
2017 Aug 17
0
PAM Clustering
...ata <- read.csv2("data.txt",dec='.')
library(cluster)
cluster.pam = pam(MYdata,10)
table(cluster.pam$clustering)
filenameclu = paste("clusters", ".txt")
write.table(cluster.pam$clustering, file=filenameclu,sep=",")
2017-08-17 10:28 GMT+02:00 Sema Atasever <s.atasever at gmail.com>:
> Dear Authorized Sir / Madam,
>
> I have a data set in which each row indicates an amino asid and each
> column corresponds
> to a feature (in total 539 features).
> I want to use PAM Clustering usign this data set.
>
>
> *when i ran R s...
2017 Aug 17
2
PAM Clustering
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2017 Jul 10
1
PAM Clustering
Dear Authorized Sir / Madam,
I have an R script file in which it includes PAM Clustering codes:
*when i ran R script i am getting this error:*
*Error in pam(d, 10) : x is not a numeric dataframe or matrix.*
*Execution halted*
How can i fix this error?
Thanks in advance.
?
data.csv
<https://drive.google.com/file/d/0B4rY6f4kvHeCcVpLRTQ5VDhDNUk/view?usp=drive_web>
?
*pam.R*
data <-