Displaying 3 results from an estimated 3 matches for "arrayqualitymetrics".
2011 Oct 07
1
Creating One Single Object with Phenotype and Expression Data
...ed
phenotype data). Does anyone have any advice on how I could make a single
object that would do this? Other relevant info: I want to use the pdata()
function, and I have all the phenotype data available as csv files. Here is
what I have in regards to the expression data:
library(affy)
library(arrayQualityMetrics)
inputargs <- commandArgs(TRUE)
print(inputargs)
sessionInfo()
strInputAccession <- inputargs[1]
strBaseDir <- inputargs[2]
processedDir <-
paste(strBaseDir,strInputAccession,"PROCESSED/DEFAULT",sep="/")
qcDir <- paste(strBaseDir,strInputAccession,"QC"...
2011 Nov 18
2
libpng warning: Application built with libpng-1.2.26 but running with 1.5.2
Hi,
I have a problem on my mac when trying in R to produce png images.
I am getting this warnings with the ArrayQualityMetrics package:
> arrayQualityMetrics(rma_fatBody, outdir="normData", force =T)
The report will be written into directory 'normData'.
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
(loaded the KernSmooth namespace)
libpng warning: Application built with libpng-1.2.26 but runn...
2011 Oct 07
0
Creating One Single Object Linking Multiple Datapoints
...d make a single
>> object that would do this? Other relevant info: I want to use the pdata()
>> function, and I have all the phenotype data available as csv files. Here
>> is
>> what I have in regards to the expression data:
>>
>> library(affy)
>> library(arrayQualityMetrics)
>>
>> inputargs<- commandArgs(TRUE)
>> print(inputargs)
>> sessionInfo()
>>
>> strInputAccession<- inputargs[1]
>> strBaseDir<- inputargs[2]
>>
>> processedDir<-
>> paste(strBaseDir,**strInputAccession,"PROCESSED/**DEFAUL...