search for: arrayqualitymetr

Displaying 3 results from an estimated 3 matches for "arrayqualitymetr".

2011 Oct 07
1
Creating One Single Object with Phenotype and Expression Data
...ed phenotype data). Does anyone have any advice on how I could make a single object that would do this? Other relevant info: I want to use the pdata() function, and I have all the phenotype data available as csv files. Here is what I have in regards to the expression data: library(affy) library(arrayQualityMetrics) inputargs <- commandArgs(TRUE) print(inputargs) sessionInfo() strInputAccession <- inputargs[1] strBaseDir <- inputargs[2] processedDir <- paste(strBaseDir,strInputAccession,"PROCESSED/DEFAULT",sep="/") qcDir <- paste(strBaseDir,strInputAccession,"QC&q...
2011 Nov 18
2
libpng warning: Application built with libpng-1.2.26 but running with 1.5.2
Hi, I have a problem on my mac when trying in R to produce png images. I am getting this warnings with the ArrayQualityMetrics package: > arrayQualityMetrics(rma_fatBody, outdir="normData", force =T) The report will be written into directory 'normData'. KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 (loaded the KernSmooth namespace) libpng warning: Application built with libpng-1.2.26 but r...
2011 Oct 07
0
Creating One Single Object Linking Multiple Datapoints
...d make a single >> object that would do this? Other relevant info: I want to use the pdata() >> function, and I have all the phenotype data available as csv files. Here >> is >> what I have in regards to the expression data: >> >> library(affy) >> library(arrayQualityMetrics) >> >> inputargs<- commandArgs(TRUE) >> print(inputargs) >> sessionInfo() >> >> strInputAccession<- inputargs[1] >> strBaseDir<- inputargs[2] >> >> processedDir<- >> paste(strBaseDir,**strInputAccession,"PROCESSED/**DEF...