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...ong Could you please have al look at it.. here is the script I have been using # source of this code below #http://cran.r-project.org/doc/contrib/Lemon-kickstart/kr_scrpt.html # store the current directory initial.dir<-getwd() # change to the new directory setwd("/data/homes/ccpage/ngs/Argueso/Tophat/flocculated/cuffdiff/ fpkmgt") # source of this code below # https://stat.ethz.ch/pipermail/r-help/2008-March/158336.html files <- Sys.glob("*.csv") # get names of files to process #result <- numeric(length(files)) # preallocate assuming single value from each fi...