search for: archaea

I am new to R, and I couldn't find the answers to my question in a faq. This could however be because I didn't know what to look for...:) I have three classes of data, data for bacteria, archaea and eukaryotes. I wish to display these in a histogram where all of the values are used to calculate each column. But, I want each column split in three, where the size of each coloured area represents the proportions of the values in that column that comes from each of the three classes. Do yo...

...value in each row? I'd really like to figure out: 1) What's actually going on? 2) Is there a good way to run a command over a large dataset in R and better be able to tell what is going on? More specifically, when I run each line in R it looks something like this (w/ dif. values per row): Archaea|Euryarchaeota|Methanobacteria|Methanobacteriales|Methanobacteriaceae|Methanobrevibacter,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0...

...19733 13694 Global Ocean Sampling Expedition Metagenome 2 20823 13696 5-Way (CG) Acid Mine Drainage Biofilm Metagenome 3 - 13699 Waseca County Farm Soil Metagenome 4 - 13702 Methane-Oxidizing Archaea from Deep- Sea Sediments 5 - 13729 Pacific Beach Sand Metagenome Thanks for your help. Hopefully this is something simple that I missed in the documentation/help. Chris -- ------------------- Chris Stubben Los Alamos National Lab BioScience Di...