search for: aptreeshap

Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. ------------------------------------------------------------ Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. te...

Hi I am looking for a package that 1. reads in a phylogenetic tree in NEXUS format 2. given two members/nodes on the tree, can return the distance between the two using the tree. I came across the following packages on CRAN ouch, ape, apTreeShape, phylgr all of which seem to provide extensive range of functions for reading in a Nexus-format tree and performing phylogenetic analyses, tree comparisons etc, but none to the best of my undestanding seem to provide a function obtain distances (in terms of branch lengths) between two nodes on a s...

Is there a painless way to find the names of all packages on CRAN that "Depend" on a specified package? url: www.econ.uiuc.edu/~roger Roger Koenker email rkoenker at uiuc.edu Department of Economics vox: 217-333-4558 University of Illinois fax: 217-244-6678 Champaign, IL 61820

...other packages at startup############# print ("START OF CODE ADDED BY GAURAV YADAV") TEMP <- Sys.getenv("R_DEFAULT_PACKAGES") print ("R_DEFAULT_PACKAGES") print (TEMP) print ("=======") TEMP <- c(TEMP,"aplpack","approximator","apTreeshape","ArDec","arules","ash","aspace","assist","aster","asypow","aws","base","bayesm","bayesmix","bayesSurv","BayesTree","BayesValidate","betareg",&...